Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA16_RS06410 Genome accession   NZ_CP094797
Coordinates   1316008..1317051 (+) Length   347 a.a.
NCBI ID   WP_262519424.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311008..1322051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA16_RS06385 (MUA16_06380) ymfI 1311808..1312512 (+) 705 WP_000646219.1 elongation factor P 5-aminopentanone reductase -
  MUA16_RS06390 (MUA16_06385) - 1312617..1313444 (+) 828 WP_000214890.1 YmfK family protein -
  MUA16_RS06395 (MUA16_06390) - 1313463..1313855 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  MUA16_RS06400 (MUA16_06395) pgsA 1313889..1314467 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA16_RS06405 (MUA16_06400) - 1314692..1315843 (+) 1152 WP_000020355.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA16_RS06410 (MUA16_06405) recA 1316008..1317051 (+) 1044 WP_262519424.1 recombinase RecA Machinery gene
  MUA16_RS06415 (MUA16_06410) rny 1317405..1318964 (+) 1560 WP_001050913.1 ribonuclease Y -
  MUA16_RS06420 (MUA16_06415) - 1319260..1319475 (-) 216 WP_000026308.1 hypothetical protein -
  MUA16_RS06425 (MUA16_06420) - 1319649..1320446 (+) 798 WP_001222103.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37686.55 Da        Isoelectric Point: 4.8509

>NTDB_id=672752 MUA16_RS06410 WP_262519424.1 1316008..1317051(+) (recA) [Staphylococcus aureus strain IVB6163]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNIGRRVSTTSTGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQSNGGVAAFIDAEHALDPEYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKMYLKENPQIKEEIDR
KLREKLSISDGDVEETEDAPKSLFDEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=672752 MUA16_RS06410 WP_262519424.1 1316008..1317051(+) (recA) [Staphylococcus aureus strain IVB6163]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCTTTCGGTAAAGGTGCCGTAATGAA
GTTGGGTGACAATATAGGTCGCCGAGTTTCAACTACATCAACTGGTTCAGTTACATTAGATAATGCGCTAGGTGTAGGTG
GCTATCCTAAAGGACGAATTATTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACAACAGTAGCGCTTCACGCTATTGCT
GAAGTACAAAGTAATGGCGGGGTGGCAGCATTTATCGATGCTGAACATGCTTTAGATCCAGAATATGCTCAAGCATTAGG
CGTAGATATCGATAATTTATATTTATCGCAACCGGATCATGGTGAACAAGGTCTTGAAATCGCTGAAGCATTTGTTAGAA
GTGGTGCAGTTGATATTGTAGTTGTAGACTCAGTTGCTGCTTTAACACCTAAAGCTGAAATTGAAGGAGAAATGGGAGAC
ACTCACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCGTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAATACAAC
TGCTATTTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCAGAGACTACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCAGTAAGACTAGAAGTACGTCGTGCAGAACAGCTTAAACAAGGACAAGAAATTGTAGGTAATAGA
ACTAAAATTAAAGTCGTTAAAAATAAAGTGGCACCACCATTTAGAGTAGCTGAAGTTGATATTATGTATGGACAAGGTAT
TTCTAAAGAGGGTGAACTTATTGATTTAGGTGTTGAAAACGACATCGTTGATAAATCAGGAGCATGGTATTCATACAATG
GCGAACGAATGGGTCAAGGTAAGGAAAATGTTAAAATGTACTTGAAAGAAAATCCACAAATTAAAGAAGAAATTGATCGT
AAATTGAGAGAAAAATTAAGTATATCTGACGGTGATGTTGAAGAAACGGAAGATGCACCAAAGTCATTATTTGACGAAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.133

95.389

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

69.912

97.695

0.683
  recA Streptococcus pneumoniae R6

64.655

100

0.648
  recA Streptococcus pneumoniae Rx1

64.655

100

0.648
  recA Streptococcus pneumoniae D39

64.655

100

0.648
  recA Streptococcus pneumoniae TIGR4

64.655

100

0.648
  recA Streptococcus pyogenes NZ131

68.293

94.524

0.646
  recA Acinetobacter baumannii D1279779

64.368

100

0.646
  recA Streptococcus mitis SK321

64.265

100

0.643
  recA Acinetobacter baylyi ADP1

64.265

100

0.643
  recA Streptococcus mutans UA159

63.714

100

0.643
  recA Neisseria gonorrhoeae MS11

64.62

98.559

0.637
  recA Neisseria gonorrhoeae strain FA1090

64.62

98.559

0.637
  recA Neisseria gonorrhoeae MS11

64.62

98.559

0.637
  recA Streptococcus mitis NCTC 12261

65.766

95.965

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.602

97.695

0.631
  recA Helicobacter pylori strain NCTC11637

62.824

100

0.628
  recA Helicobacter pylori 26695

62.824

100

0.628
  recA Lactococcus lactis subsp. cremoris KW2

66.358

93.372

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

93.948

0.617
  recA Vibrio cholerae strain A1552

65.644

93.948

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.287

90.49

0.591
  recA Pseudomonas stutzeri DSM 10701

61.012

96.83

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

95.389

0.582
  recA Glaesserella parasuis strain SC1401

60.681

93.084

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.129

91.931

0.562