Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA20_RS07275 Genome accession   NZ_CP094742
Coordinates   1423924..1424967 (-) Length   347 a.a.
NCBI ID   WP_262620571.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6199     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1418924..1429967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA20_RS07260 (MUA20_07215) - 1420944..1421330 (-) 387 WP_262620569.1 metalloregulator ArsR/SmtB family transcription factor -
  MUA20_RS07265 (MUA20_07220) - 1421533..1421751 (+) 219 WP_037573959.1 hypothetical protein -
  MUA20_RS07270 (MUA20_07225) rny 1421822..1423381 (-) 1560 WP_262620570.1 ribonuclease Y -
  MUA20_RS07275 (MUA20_07230) recA 1423924..1424967 (-) 1044 WP_262620571.1 recombinase RecA Machinery gene
  MUA20_RS07280 (MUA20_07235) - 1425130..1426281 (-) 1152 WP_262620572.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA20_RS07285 (MUA20_07240) pgsA 1426388..1426972 (-) 585 WP_262620573.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA20_RS07290 (MUA20_07245) - 1427013..1427408 (-) 396 WP_262620574.1 RodZ family helix-turn-helix domain-containing protein -
  MUA20_RS07295 (MUA20_07250) - 1427421..1428290 (-) 870 WP_262620575.1 DUF3388 domain-containing protein -
  MUA20_RS07300 (MUA20_07255) ymfI 1428342..1429046 (-) 705 WP_262620576.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37849.87 Da        Isoelectric Point: 5.0945

>NTDB_id=671766 MUA20_RS07275 WP_262620571.1 1423924..1424967(-) (recA) [Staphylococcus chromogenes strain IVB6199]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
KVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISREGELIDLGVEYDIVDKSGAWYSYNGERMGQGKENVKMFLKEHPELEDEIDR
KLREKLGIFDGDVDENEADSPQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=671766 MUA20_RS07275 WP_262620571.1 1423924..1424967(-) (recA) [Staphylococcus chromogenes strain IVB6199]
TTGGATAATGAACGTCAAAAAGCACTCGATACAGTAATTAAAAATATGGAAAAATCATTCGGTAAAGGTGCCGTAATGAA
ACTTGGAGAAAATAAAGATCGCCGTGTTTCAAGTGTTTCAAGTGGCTCAGTCACTTTGGACCATGCACTTGGAGTAGGTG
GTTATCCTAAAGGTCGTATTATAGAAGTGTACGGCCCAGAAAGCTCAGGTAAAACAACGGTTGCTCTCCATGCAATCGCA
AAAGTTCAAAAAAATGGTGGAGTTGCAGCATTTATTGATGCTGAGCATGCTTTGGATCCAGTATATGCTCAGGCACTTGG
TGTAGATATTGATAATTTATATTTATCTCAGCCTGACCATGGTGAGCAAGGTCTTGAAATTGCAGAAGCATTTGTACGAA
GTGGTGCTGTAGATATCATTATCGTTGACTCTGTTGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACGCACGTTGGTTTACAAGCGCGATTAATGTCTCAAGCACTACGTAAATTATCAGCAGCTATTTCAAAATCAAATACAAC
AGCTATTTTTATTAACCAAATTCGTGAAAAAGTCGGTGTGATGTTTGGTAACCCTGAAACAACACCTGGGGGCCGCGCCT
TAAAATTCTATAGTTCTGTTCGTCTAGAGGTACGTCGTGCTGAACAATTAAAACAAGGTCAAGACATTGTGGGGAATCGT
ACAAAAATCAAAGTTGTTAAAAATAAAGTAGCACCTCCGTTTAAGGTCGCAGAAGTAGATATCATGTATGGACAAGGTAT
CTCACGTGAAGGTGAACTTATAGACTTAGGCGTGGAATATGACATCGTTGATAAATCAGGTGCTTGGTATTCTTACAATG
GTGAACGTATGGGTCAAGGTAAAGAAAATGTTAAAATGTTCTTGAAAGAGCATCCTGAACTTGAAGATGAAATCGATCGT
AAGTTGCGTGAGAAGTTGGGCATTTTCGATGGCGACGTTGATGAAAACGAAGCTGATTCACCTCAAACACTTTTTGACGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.948

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

72.866

94.524

0.689
  recA Streptococcus pyogenes NZ131

69.909

94.813

0.663
  recA Streptococcus mutans UA159

65.616

100

0.66
  recA Streptococcus pneumoniae TIGR4

65.517

100

0.657
  recA Streptococcus pneumoniae Rx1

65.517

100

0.657
  recA Streptococcus pneumoniae D39

65.517

100

0.657
  recA Streptococcus pneumoniae R6

65.517

100

0.657
  recA Streptococcus mitis NCTC 12261

66.366

95.965

0.637
  recA Streptococcus mitis SK321

66.066

95.965

0.634
  recA Lactococcus lactis subsp. cremoris KW2

66.163

95.389

0.631
  recA Neisseria gonorrhoeae strain FA1090

61.96

100

0.62
  recA Neisseria gonorrhoeae MS11

61.96

100

0.62
  recA Neisseria gonorrhoeae MS11

61.96

100

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.046

94.813

0.617
  recA Acinetobacter baumannii D1279779

64.724

93.948

0.608
  recA Vibrio cholerae strain A1552

64.11

93.948

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

93.948

0.602
  recA Acinetobacter baylyi ADP1

64.11

93.948

0.602
  recA Helicobacter pylori 26695

63.415

94.524

0.599
  recA Helicobacter pylori strain NCTC11637

63.11

94.524

0.597
  recA Ralstonia pseudosolanacearum GMI1000

65.176

90.202

0.588
  recA Pseudomonas stutzeri DSM 10701

61.35

93.948

0.576
  recA Glaesserella parasuis strain SC1401

61.61

93.084

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

91.066

0.568