Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA92_RS06300 Genome accession   NZ_CP094721
Coordinates   1291540..1292589 (-) Length   349 a.a.
NCBI ID   WP_262560722.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1286540..1297589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS06285 (MUA92_06285) - 1288492..1288869 (-) 378 WP_262560726.1 metalloregulator ArsR/SmtB family transcription factor -
  MUA92_RS06290 (MUA92_06290) pcp 1289016..1289657 (+) 642 WP_262560725.1 pyroglutamyl-peptidase I -
  MUA92_RS06295 (MUA92_06295) rny 1289701..1291260 (-) 1560 WP_262560724.1 ribonuclease Y -
  MUA92_RS06300 (MUA92_06300) recA 1291540..1292589 (-) 1050 WP_262560722.1 recombinase RecA Machinery gene
  MUA92_RS06305 (MUA92_06305) - 1292784..1293929 (-) 1146 WP_262560721.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA92_RS06310 (MUA92_06310) pgsA 1294162..1294746 (-) 585 WP_262560720.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA92_RS06315 (MUA92_06315) - 1294786..1295181 (-) 396 WP_262560718.1 helix-turn-helix domain-containing protein -
  MUA92_RS06320 (MUA92_06320) - 1295198..1296031 (-) 834 WP_262560717.1 YmfK family protein -
  MUA92_RS06325 (MUA92_06325) - 1296080..1296781 (-) 702 WP_262560716.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37664.62 Da        Isoelectric Point: 5.0746

>NTDB_id=671238 MUA92_RS06300 WP_262560722.1 1291540..1292589(-) (recA) [Staphylococcus sp. IVB6227]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKDRNVSTISTGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISRQGELIDLGVAHDIVDKSGAWYSYNGERMGQGKENVKLFLKENPQLEAEIDQ
KLREKLGIAGDVDAEADEQSEDADTLFDA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=671238 MUA92_RS06300 WP_262560722.1 1291540..1292589(-) (recA) [Staphylococcus sp. IVB6227]
TTGGATAATGAACGTCAGAAAGCATTAGATACAGTAATCAAAAATATGGAGAAGTCATTCGGTAAAGGCGCGGTAATGAA
GCTTGGTGATAACAAAGACCGCAATGTCTCAACCATTTCAACAGGATCTGTAACATTAGATCATGCATTAGGTGTAGGTG
GTTACCCGAAAGGACGTATTATCGAAGTATACGGGCCAGAGAGTTCAGGTAAAACAACCGTTGCGTTACATGCGATTGCA
GAAGTACAGAAAAACGGCGGTGTTGCTGCATTTATTGATGCTGAGCACGCACTAGACCCTGTATATGCAGAGGCATTAGG
TGTAGATATTAATAATTTATATCTTTCTCAACCGGATCACGGAGAGCAAGGCTTAGAGATTGCTGAAGCCTTTGTACGCA
GTGGTGCTGTTGACATTGTGGTTGTTGACTCTGTTGCAGCATTAACACCGAAGGCAGAGATTGAAGGAGAAATGGGCGAT
ACACACGTTGGTTTACAAGCACGTTTGATGTCACAAGCGTTGCGTAAATTATCAGCAGCCATTTCTAAATCAAAAACGAC
AGCTATCTTTATTAACCAAATTCGTGAAAAGGTTGGCGTTATGTTTGGTAACCCTGAAACAACACCAGGTGGTCGTGCAT
TGAAGTTTTATAGCTCTGTTCGTTTAGAAGTAAGACGTGCTGAACAGTTGAAACAAGGACAAGATATCGTTGGTAACCGC
ACTAAGATAAAGGTTGTAAAAAACAAAGTGGCACCACCATTCAAAGTAGCAGAAGTTGATATTATGTATGGTCAAGGTAT
CTCTCGACAAGGTGAATTAATCGACTTAGGTGTGGCACATGATATCGTTGATAAGTCAGGTGCATGGTATTCTTACAATG
GTGAACGAATGGGTCAAGGTAAGGAAAATGTAAAACTTTTCTTAAAAGAGAACCCACAATTAGAAGCGGAAATCGATCAA
AAATTACGTGAAAAACTTGGCATTGCTGGTGATGTTGACGCTGAAGCTGATGAACAATCAGAAGATGCAGACACATTGTT
TGATGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.41

0.713
  recA Latilactobacillus sakei subsp. sakei 23K

70.588

97.421

0.688
  recA Streptococcus pyogenes NZ131

69.301

94.269

0.653
  recA Streptococcus mutans UA159

65.13

99.427

0.648
  recA Streptococcus pneumoniae D39

66.565

94.269

0.628
  recA Streptococcus mitis SK321

66.565

94.269

0.628
  recA Streptococcus pneumoniae Rx1

66.565

94.269

0.628
  recA Streptococcus pneumoniae R6

66.565

94.269

0.628
  recA Streptococcus pneumoniae TIGR4

66.565

94.269

0.628
  recA Acinetobacter baylyi ADP1

62.824

99.427

0.625
  recA Streptococcus mitis NCTC 12261

66.261

94.269

0.625
  recA Acinetobacter baumannii D1279779

62.178

100

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

98.281

0.619
  recA Lactococcus lactis subsp. cremoris KW2

64.759

95.129

0.616
  recA Neisseria gonorrhoeae MS11

64.742

94.269

0.61
  recA Neisseria gonorrhoeae strain FA1090

64.742

94.269

0.61
  recA Neisseria gonorrhoeae MS11

64.742

94.269

0.61
  recA Helicobacter pylori strain NCTC11637

61.739

98.854

0.61
  recA Helicobacter pylori 26695

61.739

98.854

0.61
  recA Vibrio cholerae strain A1552

64.724

93.41

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.41

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

94.842

0.587
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.685

0.582
  recA Pseudomonas stutzeri DSM 10701

61.043

93.41

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

91.691

0.564
  recA Glaesserella parasuis strain SC1401

60.372

92.55

0.559