Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA31_RS08175 Genome accession   NZ_CP094698
Coordinates   1719511..1720575 (-) Length   354 a.a.
NCBI ID   WP_262546198.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6241     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1714511..1725575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA31_RS08155 (MUA31_08155) - 1715364..1715582 (+) 219 WP_002480735.1 hypothetical protein -
  MUA31_RS08160 (MUA31_08160) - 1715687..1716517 (-) 831 WP_002480734.1 LysR family transcriptional regulator -
  MUA31_RS08165 (MUA31_08165) - 1716640..1717635 (+) 996 WP_070848256.1 YeiH family protein -
  MUA31_RS08170 (MUA31_08170) rny 1717752..1719311 (-) 1560 WP_002480732.1 ribonuclease Y -
  MUA31_RS08175 (MUA31_08175) recA 1719511..1720575 (-) 1065 WP_262546198.1 recombinase RecA Machinery gene
  MUA31_RS08180 (MUA31_08180) - 1720744..1721889 (-) 1146 WP_262546199.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA31_RS08185 (MUA31_08185) pgsA 1722024..1722605 (-) 582 WP_023015674.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA31_RS08190 (MUA31_08190) - 1722631..1723029 (-) 399 WP_002480728.1 RodZ family helix-turn-helix domain-containing protein -
  MUA31_RS08195 (MUA31_08195) - 1723051..1723890 (-) 840 WP_023015675.1 DUF3388 domain-containing protein -
  MUA31_RS08200 (MUA31_08200) ymfI 1724023..1724727 (-) 705 WP_262546200.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38530.59 Da        Isoelectric Point: 5.3701

>NTDB_id=670765 MUA31_RS08175 WP_262546198.1 1719511..1720575(-) (recA) [Staphylococcus simulans strain IVB6241]
MNNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGIAAFIDAEHALDPVYAEALGVDINNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPDVKAEIDQ
KLRQKLGIFDGDVEEKEEKEAEKNSENASLFEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=670765 MUA31_RS08175 WP_262546198.1 1719511..1720575(-) (recA) [Staphylococcus simulans strain IVB6241]
TTGAATAATGAACGTCAAAAAGCGCTAGATACTGTAATTAAGAATATGGAGAAATCGTTTGGTAAGGGTGCGGTTATGAA
GTTAGGCGATAACAAAGCGCGCCGAGTTTCAAGTGTATCAAGCGGTTCTGTTACATTAGATAATGCCTTAGGAGTAGGCG
GATACCCTAAAGGAAGAATTGTAGAAATTTACGGACCAGAAAGTTCTGGTAAAACAACAGTTGCATTGCATGCGATTGCT
GAAGTACAAAAACAAGGCGGAATTGCAGCATTTATTGATGCTGAGCACGCGTTAGATCCTGTATATGCAGAAGCATTAGG
TGTAGATATCAATAACTTATACCTTTCACAACCTGACCATGGGGAACAAGGTTTAGAAATTGCAGAAGCATTTGTGCGTA
GTGGTGCAGTAGACATTATTGTTGTCGACTCAGTTGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCTCGTTTAATGTCACAAGCTTTACGTAAACTTTCAGGTGCTATTTCTAAATCAAACTGTAC
AGCGATTTTCATCAACCAAATCCGTGAAAAAGTCGGCGTAATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCAT
TGAAGTTCTACAGCTCAGTACGTTTAGAAGTACGTCGTGCAGAACAATTAAAACAAGGCCAAGAAATTGTAGGTAACCGT
ACTAAAATTAAAGTAGTTAAAAACAAAGTTGCGCCACCATTCAGAGTAGCAGAAGTTGATATTATGTACGGACAAGGTAT
TTCTAAAGAAGGCGAATTAATCGACTTAGGTGTTGAACATGATATCGTTGATAAATCAGGTGCTTGGTATTCTTACAATG
GCGACCGTATGGGTCAAGGAAAAGAAAACGTTAAGAATTACTTGAAAGAACATCCTGATGTTAAAGCAGAGATCGATCAA
AAATTACGTCAAAAACTTGGTATTTTTGATGGAGATGTTGAAGAGAAAGAAGAAAAAGAAGCAGAAAAAAATAGTGAAAA
TGCATCTTTATTTGAAGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.767

92.09

0.698
  recA Latilactobacillus sakei subsp. sakei 23K

72.866

92.655

0.675
  recA Streptococcus pneumoniae D39

64.368

98.305

0.633
  recA Streptococcus pneumoniae R6

64.368

98.305

0.633
  recA Streptococcus pneumoniae TIGR4

64.368

98.305

0.633
  recA Streptococcus pneumoniae Rx1

64.368

98.305

0.633
  recA Streptococcus mitis SK321

64

98.87

0.633
  recA Streptococcus pyogenes NZ131

67.372

93.503

0.63
  recA Streptococcus mitis NCTC 12261

63.429

98.87

0.627
  recA Streptococcus mutans UA159

63.429

98.87

0.627
  recA Lactococcus lactis subsp. cremoris KW2

67.069

93.503

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.791

97.175

0.61
  recA Acinetobacter baylyi ADP1

65.951

92.09

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

92.09

0.605
  recA Vibrio cholerae strain A1552

65.644

92.09

0.605
  recA Acinetobacter baumannii D1279779

65.031

92.09

0.599
  recA Neisseria gonorrhoeae MS11

64.438

92.938

0.599
  recA Neisseria gonorrhoeae MS11

64.438

92.938

0.599
  recA Neisseria gonorrhoeae strain FA1090

64.438

92.938

0.599
  recA Helicobacter pylori 26695

63.11

92.655

0.585
  recA Ralstonia pseudosolanacearum GMI1000

66.134

88.418

0.585
  recA Helicobacter pylori strain NCTC11637

62.805

92.655

0.582
  recA Glaesserella parasuis strain SC1401

58.12

99.153

0.576
  recA Pseudomonas stutzeri DSM 10701

62.577

92.09

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

93.503

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

90.395

0.542