Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MMY79_RS07520 Genome accession   NZ_CP094657
Coordinates   1605037..1606083 (-) Length   348 a.a.
NCBI ID   WP_252612754.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600037..1611083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS07485 (MMY79_07480) - 1600297..1600797 (+) 501 WP_003652178.1 OmpH family outer membrane protein -
  MMY79_RS07490 (MMY79_07485) lpxD 1600802..1601872 (+) 1071 WP_252612750.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  MMY79_RS07495 (MMY79_07490) fabZ 1601879..1602364 (+) 486 WP_003652176.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MMY79_RS07500 (MMY79_07495) lpxA 1602361..1603149 (+) 789 WP_252612751.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  MMY79_RS07505 (MMY79_07500) - 1603208..1604068 (-) 861 WP_252612752.1 YbgF trimerization domain-containing protein -
  MMY79_RS07515 (MMY79_07510) - 1604495..1604977 (-) 483 WP_252612753.1 regulatory protein RecX -
  MMY79_RS07520 (MMY79_07515) recA 1605037..1606083 (-) 1047 WP_252612754.1 recombinase RecA Machinery gene
  MMY79_RS07525 (MMY79_07520) - 1606229..1606657 (-) 429 WP_252613473.1 S4 domain-containing protein -
  MMY79_RS07530 (MMY79_07525) - 1606641..1607327 (-) 687 WP_252612755.1 HAD-IA family hydrolase -
  MMY79_RS07535 (MMY79_07530) - 1607730..1608023 (+) 294 WP_252612756.1 hypothetical protein -
  MMY79_RS07540 (MMY79_07535) - 1608005..1608541 (-) 537 WP_252612757.1 GNAT family N-acetyltransferase -
  MMY79_RS07545 (MMY79_07540) gigD 1608571..1609020 (-) 450 WP_238611544.1 Lrp/AsnC family transcriptional regulator GigD -
  MMY79_RS07550 (MMY79_07545) kynU 1609168..1610418 (+) 1251 WP_252612758.1 kynureninase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37827.14 Da        Isoelectric Point: 4.8522

>NTDB_id=670427 MMY79_RS07520 WP_252612754.1 1605037..1606083(-) (recA) [Acinetobacter sp. XS-4]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFREALFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIER
NIREQLLTTGTTTEQIEDEEEADLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=670427 MMY79_RS07520 WP_252612754.1 1605037..1606083(-) (recA) [Acinetobacter sp. XS-4]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAACAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCTGTTGAAGCTGTATCTACAGGCTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCAAAAGGTCGTATTGTCGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTACAAGCGATTGCA
CAATGTCAAAAAACTGGCGGCACTTGTGCATTTATCGATGCAGAGCACGCTTTAGATCCACAATATGCACGTAAGCTTGG
TGTAGACATTGATAACCTGCTTGTATCACAGCCTGATAACGGTGAACAAGCACTTGAAATTGCAGATATGTTAGTTCGCT
CTGGCGCAATTGACTTAATCGTTGTCGATTCAGTCGCAGCACTTACCCCTAAAGCAGAAATTGAAGGCGAGATGGGTGAC
TCTCATATGGGCTTACAAGCTCGTCTAATGAGTCAGGCACTTCGTAAAATTACTGGTAATGCTAAGCGCTCAAACTGTAT
GGTTATTTTCATTAACCAGATCCGTATGAAGATTGGGGTAATGTTTGGTAGCCCTGAGACCACAACTGGTGGTAACGCAT
TGAAGTTCTACGCTTCTGTACGTTTAGATATCCGCCGTATTGGTCAAGTAAAAGAAGGCGATGAAATCGTCGGCTCTGAA
ACTCGTGTTAAAGTTGTTAAAAACAAAATGGCTCCTCCTTTCAGAGAAGCTCTTTTCCAAATCCTATATGGTAAAGGCAC
AAACCAACTAGGCGAACTTGTAGATTTAGCTGTACAGCAAGATATCGTACAAAAAGCAGGTGCTTGGTACTCATATCAAG
GTAATAAAATTGGTCAAGGTAAGAACAATGTTATTCGCCACTTTGAAGAGAACCCTCAAATGGCAGGAGAGATTGAACGC
AATATCCGTGAGCAACTGTTAACAACAGGCACGACTACTGAGCAAATTGAAGATGAAGAAGAAGCTGATCTTTTATTAGA
ATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

95.989

100

0.963
  recA Acinetobacter baylyi ADP1

92.507

99.713

0.922
  recA Pseudomonas stutzeri DSM 10701

74.063

99.713

0.739
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Glaesserella parasuis strain SC1401

71.914

93.103

0.67
  recA Neisseria gonorrhoeae MS11

67.353

97.701

0.658
  recA Neisseria gonorrhoeae MS11

67.353

97.701

0.658
  recA Neisseria gonorrhoeae strain FA1090

67.353

97.701

0.658
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.253

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.115

0.603
  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Streptococcus mutans UA159

59.599

100

0.598
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

93.678

0.583
  recA Streptococcus pyogenes NZ131

61.231

93.391

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.529

0.572
  recA Streptococcus pneumoniae Rx1

60.736

93.678

0.569
  recA Streptococcus mitis SK321

60.736

93.678

0.569
  recA Streptococcus mitis NCTC 12261

60.736

93.678

0.569
  recA Streptococcus pneumoniae D39

60.736

93.678

0.569
  recA Streptococcus pneumoniae R6

60.736

93.678

0.569
  recA Streptococcus pneumoniae TIGR4

60.736

93.678

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.816

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

92.241

0.54