Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MP622_RS07030 Genome accession   NZ_CP094643
Coordinates   1468448..1469494 (+) Length   348 a.a.
NCBI ID   WP_243793235.1    Uniprot ID   -
Organism   Acinetobacter sp. PK01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1463448..1474494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP622_RS07010 (MP622_07010) - 1465521..1466255 (-) 735 WP_104442205.1 phosphoglycerate mutase family protein -
  MP622_RS07015 (MP622_07015) - 1466308..1467165 (-) 858 WP_044740006.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MP622_RS07020 (MP622_07020) - 1467180..1467866 (+) 687 WP_044740007.1 HAD-IA family hydrolase -
  MP622_RS07025 (MP622_07025) - 1467859..1468299 (+) 441 WP_016167730.1 S4 domain-containing protein -
  MP622_RS07030 (MP622_07030) recA 1468448..1469494 (+) 1047 WP_243793235.1 recombinase RecA Machinery gene
  MP622_RS07035 (MP622_07035) - 1469571..1470164 (+) 594 WP_044740009.1 regulatory protein RecX -
  MP622_RS07045 (MP622_07045) - 1470582..1471460 (+) 879 WP_044740051.1 YbgF trimerization domain-containing protein -
  MP622_RS07050 (MP622_07050) lpxA 1471499..1472287 (-) 789 WP_016167726.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  MP622_RS07055 (MP622_07055) fabZ 1472295..1472771 (-) 477 WP_104442206.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MP622_RS07060 (MP622_07060) lpxD 1472779..1473849 (-) 1071 WP_044740010.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  MP622_RS07065 (MP622_07065) - 1473853..1474347 (-) 495 WP_243793237.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37734.17 Da        Isoelectric Point: 4.9413

>NTDB_id=670311 MP622_RS07030 WP_243793235.1 1468448..1469494(+) (recA) [Acinetobacter sp. PK01]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNQLGELVDLAVQQDIIQKAGAWYSYQGNKIGQGKNNVIRHLEENPQLAQEVER
IIRDQLLTTGGVVEEKEEEDESDLLLDA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=670311 MP622_RS07030 WP_243793235.1 1468448..1469494(+) (recA) [Acinetobacter sp. PK01]
ATGGATGAGAATAAAAGTAAGGCACTCAATGCTGCCCTAAGCCAAATTGAAAAACAGTTTGGTAAAAATACAGTTATGCG
CCTTGGTGACAATACAGTGCAAGCTGTTGAAGCCGTTTCAACAGGATCATTGACACTCGATATCGCACTAGGTATTGGTG
GCTTACCAAAGGGTCGTATTGTTGAAATTTACGGTCCAGAATCTTCAGGTAAAACCACCATGACATTGCAAGCAATTGCA
CAATGTCAAAAAGCAGGTGGTACATGTGCCTTTATCGATGCTGAACATGCACTTGATCCACAATATGCTCGCAAGCTTGG
TGTTGATATTGACAACCTCTTAGTTTCTCAACCAGACCATGGTGAGCAAGCACTCGAAATTGCAGACATGCTAGTACGTT
CTGGTGCAATTGACTTAATCGTAGTCGACTCTGTTGCAGCACTTACACCACGCGCTGAAATCGAAGGTGAAATGGGTGAT
TCACACATGGGGCTACAAGCGCGCTTAATGAGCCAAGCCTTACGTAAAATTACAGGTAATGCCAAACGTTCGAACTGTAT
GGTGATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGTCCTGAAACGACAACTGGTGGTAACGCAT
TAAAATTCTATGCTTCTGTTCGCCTTGACATTCGCCGTGTTGGCCAAGTTAAAGAAGGTGACGAAATTATAGGTTCAGAA
ACTAAAGTTAAAGTAGTTAAAAATAAAATGGCGCCTCCATTTAAAGAAGCTCTTTTCCAGATTCTTTATGGTAAGGGCGT
TAACCAACTAGGTGAATTGGTTGATCTTGCTGTTCAACAAGACATCATTCAAAAAGCAGGTGCTTGGTATTCTTATCAAG
GGAACAAAATTGGTCAAGGTAAAAACAATGTCATTCGTCACCTTGAAGAAAATCCACAATTGGCGCAAGAAGTGGAACGC
ATTATCCGTGACCAATTATTAACAACGGGTGGTGTTGTAGAAGAGAAAGAAGAAGAGGATGAATCTGACCTCTTGCTCGA
TGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

91.714

100

0.922
  recA Acinetobacter baylyi ADP1

91.643

99.713

0.914
  recA Pseudomonas stutzeri DSM 10701

75.38

94.54

0.713
  recA Glaesserella parasuis strain SC1401

69.275

99.138

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.783

93.966

0.684
  recA Vibrio cholerae strain A1552

72.783

93.966

0.684
  recA Ralstonia pseudosolanacearum GMI1000

69.725

93.966

0.655
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.519

93.103

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.115

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Streptococcus mutans UA159

61.047

98.851

0.603
  recA Streptococcus pneumoniae R6

60.465

98.851

0.598
  recA Streptococcus pneumoniae D39

60.465

98.851

0.598
  recA Streptococcus pneumoniae TIGR4

60.465

98.851

0.598
  recA Streptococcus pneumoniae Rx1

60.465

98.851

0.598
  recA Helicobacter pylori strain NCTC11637

63.303

93.966

0.595
  recA Streptococcus mitis NCTC 12261

60.411

97.989

0.592
  recA Helicobacter pylori 26695

62.997

93.966

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.19

93.678

0.592
  recA Streptococcus pyogenes NZ131

63.077

93.391

0.589
  recA Streptococcus mitis SK321

61.963

93.678

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

60.423

95.115

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

92.241

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552