Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG826_RS28825 Genome accession   NZ_CP109041
Coordinates   6457987..6458592 (+) Length   201 a.a.
NCBI ID   WP_060897745.1    Uniprot ID   A0ABW3XCQ8
Organism   Streptomyces sp. NBC_00645     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6452987..6463592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG826_RS28790 (OG826_28800) - 6453210..6453404 (+) 195 WP_016435177.1 hypothetical protein -
  OG826_RS28795 (OG826_28805) - 6453604..6454047 (+) 444 WP_406366522.1 NUDIX domain-containing protein -
  OG826_RS28800 (OG826_28810) - 6454108..6454644 (-) 537 WP_406366524.1 hypothetical protein -
  OG826_RS28805 (OG826_28815) - 6454969..6455484 (+) 516 WP_266758734.1 hypothetical protein -
  OG826_RS28820 (OG826_28830) tig 6456182..6457567 (+) 1386 WP_266758732.1 trigger factor -
  OG826_RS28825 (OG826_28835) clpP 6457987..6458592 (+) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG826_RS28830 (OG826_28840) clpP 6458711..6459391 (+) 681 WP_266758730.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG826_RS28835 (OG826_28845) clpX 6459552..6460838 (+) 1287 WP_266758728.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG826_RS28840 (OG826_28850) - 6461092..6462054 (-) 963 WP_406366527.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21293.25 Da        Isoelectric Point: 4.6663

>NTDB_id=670175 OG826_RS28825 WP_060897745.1 6457987..6458592(+) (clpP) [Streptomyces sp. NBC_00645]
MPTAAGDPIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI
KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ
ITRDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=670175 OG826_RS28825 WP_060897745.1 6457987..6458592(+) (clpP) [Streptomyces sp. NBC_00645]
ATGCCCACAGCTGCCGGCGACCCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGATGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA
AGGACATCTACCTTTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGTACCCCCGGCAA
GCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTCGCGGGCTCCGCGTCGGACATCAAGA
TCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTGACCTCCTTCCACACCGGTCAGACCGTCGAGCAG
ATCACTCGTGACTCGGACCGCGACCGCTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC
CACCGCTGCCGGTATGCCGGGCGGCGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.615

93.035

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

94.03

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

94.03

0.488
  clpP Streptococcus mutans UA159

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Streptococcus pyogenes MGAS315

52.601

86.07

0.453
  clpP Streptococcus pyogenes JRS4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

52.023

86.07

0.448
  clpP Streptococcus thermophilus LMD-9

52.023

86.07

0.448
  clpP Streptococcus pneumoniae Rx1

51.445

86.07

0.443
  clpP Streptococcus pneumoniae D39

51.445

86.07

0.443
  clpP Streptococcus pneumoniae R6

51.445

86.07

0.443
  clpP Streptococcus pneumoniae TIGR4

51.445

86.07

0.443