Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MST16_RS09215 Genome accession   NZ_CP094541
Coordinates   1886656..1887699 (+) Length   347 a.a.
NCBI ID   WP_078193524.1    Uniprot ID   -
Organism   Acinetobacter sp. YH16040_T     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1881656..1892699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST16_RS09190 (MST16_09170) - 1883166..1883609 (+) 444 WP_180004630.1 hypothetical protein -
  MST16_RS09195 (MST16_09175) - 1883698..1884441 (-) 744 WP_078188709.1 histidine phosphatase family protein -
  MST16_RS09200 (MST16_09180) - 1884511..1885362 (-) 852 WP_180004629.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MST16_RS09205 (MST16_09185) - 1885376..1886077 (+) 702 WP_180004628.1 HAD-IA family hydrolase -
  MST16_RS09210 (MST16_09190) - 1886070..1886510 (+) 441 WP_168377604.1 RNA-binding S4 domain-containing protein -
  MST16_RS09215 (MST16_09195) recA 1886656..1887699 (+) 1044 WP_078193524.1 recombinase RecA Machinery gene
  MST16_RS09220 (MST16_09200) - 1887780..1888424 (+) 645 WP_180004627.1 regulatory protein RecX -
  MST16_RS09230 (MST16_09210) - 1888921..1889782 (+) 862 Protein_1796 YbgF trimerization domain-containing protein -
  MST16_RS09235 (MST16_09215) lpxA 1889844..1890632 (-) 789 WP_180003887.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  MST16_RS09240 (MST16_09220) fabZ 1890629..1891114 (-) 486 WP_180010159.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MST16_RS09245 (MST16_09225) lpxD 1891120..1892190 (-) 1071 WP_180003885.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  MST16_RS09250 (MST16_09230) - 1892194..1892694 (-) 501 WP_180003883.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37676.09 Da        Isoelectric Point: 5.0354

>NTDB_id=670089 MST16_RS09215 WP_078193524.1 1886656..1887699(+) (recA) [Acinetobacter sp. YH16040_T]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFREAIFQILYGKGVNHLGELVDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRHLEEHPELVQTIEK
LIREQLLTTGTAPVEDKDEEEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=670089 MST16_RS09215 WP_078193524.1 1886656..1887699(+) (recA) [Acinetobacter sp. YH16040_T]
ATGGATGATAATAAAAGCAAGGCGTTAAATGCGGCCTTAAGCCAAATTGAAAAGCAGTTTGGTAAAAACACCGTTATGCG
TCTTGGTGATAATACCGTACAGGCAGTTGAAGCTGTCTCTACAGGTTCTTTAACATTAGATATCGCACTAGGTATTGGTG
GTTTGCCTAAAGGTCGTATCGTAGAAATCTACGGTCCTGAATCTTCTGGTAAAACGACTATGACATTACAAGCTATTGCA
CAATGTCAGAAAGCTGGCGGTACTTGTGCATTCATCGATGCTGAACATGCATTAGACCCTCAATACGCACGTAAACTTGG
CGTAGATATTGATAACTTACTTGTTTCACAGCCAGACAATGGTGAACAAGCACTTGAAATTGCAGACATGCTGGTACGTT
CAGGTGCCATTGACCTGATCGTTGTCGACTCTGTAGCTGCACTGACCCCTCGCGCCGAAATTGAAGGCGAAATGGGTGAC
TCACACATGGGCTTACAAGCTCGCCTGATGAGCCAAGCACTGCGTAAAATTACCGGTAATGCGAAACGTTCGAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTAATGTTTGGTAGCCCAGAAACCACAACTGGTGGTAATGCAC
TTAAATTCTATGCATCTGTACGTTTAGATATCCGCCGTATTGGTCAAGTGAAAGAAGGCGACGAAATCATTGGTTCAGAA
ACCAAAGTGAAAGTTGTGAAAAACAAAATGGCTCCTCCATTCCGTGAAGCGATTTTCCAAATTCTTTATGGTAAAGGCGT
GAACCATTTAGGTGAGCTTGTTGACCTCGCAGTACAACAAGAAATTGTTCAAAAAGCAGGTGCTTGGTATTCATACCAAG
GTGACAAGATTGGGCAAGGTAAAAACAATACCATTCGCCACTTAGAAGAACACCCTGAACTTGTGCAAACTATCGAAAAA
CTGATTCGTGAACAACTTCTGACTACGGGTACAGCACCTGTAGAAGACAAAGACGAAGAAGAACCAGACTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.404

100

0.919
  recA Acinetobacter baumannii D1279779

91.329

99.712

0.911
  recA Pseudomonas stutzeri DSM 10701

75.684

94.813

0.718
  recA Vibrio cholerae strain A1552

73.171

94.524

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.171

94.524

0.692
  recA Glaesserella parasuis strain SC1401

71.914

93.372

0.671
  recA Ralstonia pseudosolanacearum GMI1000

70.427

94.524

0.666
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.33

100

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.573

98.559

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.389

0.605
  recA Helicobacter pylori strain NCTC11637

63.609

94.236

0.599
  recA Helicobacter pylori 26695

63.303

94.236

0.597
  recA Streptococcus pneumoniae D39

60.294

97.983

0.591
  recA Streptococcus pneumoniae TIGR4

60.294

97.983

0.591
  recA Streptococcus pneumoniae Rx1

60.294

97.983

0.591
  recA Streptococcus pneumoniae R6

60.294

97.983

0.591
  recA Streptococcus mitis NCTC 12261

59.824

98.271

0.588
  recA Streptococcus mitis SK321

59.824

98.271

0.588
  recA Streptococcus mutans UA159

62.08

94.236

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.778

0.585
  recA Streptococcus pyogenes NZ131

62.154

93.66

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.795

0.571
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.507

0.548