Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTP09_RS12795 Genome accession   NZ_CP094532
Coordinates   2716006..2717010 (-) Length   334 a.a.
NCBI ID   WP_243548738.1    Uniprot ID   -
Organism   Chryseobacterium suipulveris strain SC2-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2711006..2722010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP09_RS12775 (MTP09_12775) - 2712817..2713410 (+) 594 WP_243548734.1 TetR/AcrR family transcriptional regulator -
  MTP09_RS12780 (MTP09_12780) - 2713500..2714588 (+) 1089 WP_243548735.1 FAD-binding oxidoreductase -
  MTP09_RS12785 (MTP09_12785) - 2714690..2714938 (+) 249 WP_243548736.1 hypothetical protein -
  MTP09_RS12790 (MTP09_12790) paaA 2715006..2715953 (+) 948 WP_243548737.1 1,2-phenylacetyl-CoA epoxidase subunit PaaA -
  MTP09_RS12795 (MTP09_12795) recA 2716006..2717010 (-) 1005 WP_243548738.1 recombinase RecA Machinery gene
  MTP09_RS12805 (MTP09_12805) - 2717831..2718706 (-) 876 WP_243548739.1 hypothetical protein -
  MTP09_RS12810 (MTP09_12810) - 2718706..2718984 (-) 279 WP_243548740.1 hypothetical protein -
  MTP09_RS12815 (MTP09_12815) - 2719338..2719721 (-) 384 WP_243548741.1 hypothetical protein -
  MTP09_RS12820 (MTP09_12820) - 2719749..2720009 (-) 261 WP_243548742.1 hypothetical protein -
  MTP09_RS12825 (MTP09_12825) - 2720108..2720506 (-) 399 WP_243548743.1 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35957.32 Da        Isoelectric Point: 5.5232

>NTDB_id=670055 MTP09_RS12795 WP_243548738.1 2716006..2717010(-) (recA) [Chryseobacterium suipulveris strain SC2-2]
MSSMEDKKKALALVLDKLDKTYGKGTVMTLGDDSVDTSIEVIPSGSLGLDLALGVGGYPKGRVIEIYGPESSGKTTLTLH
AIAEAQKMGGIAAFIDAEHAFDRHYAAKLGINLDDLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKSGDEA
VGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYDDTKLGQGRDAVKDMLKDNPELAE
ELEEKIKEHIKESK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=670055 MTP09_RS12795 WP_243548738.1 2716006..2717010(-) (recA) [Chryseobacterium suipulveris strain SC2-2]
ATGAGCAGTATGGAAGATAAGAAAAAAGCACTCGCCTTAGTGCTCGACAAACTCGATAAAACCTATGGAAAGGGAACCGT
AATGACTTTGGGAGACGACTCCGTGGATACTTCGATTGAAGTGATTCCATCCGGATCGCTTGGTTTGGATTTGGCGCTCG
GAGTTGGCGGTTATCCTAAAGGAAGAGTGATCGAAATTTACGGCCCTGAATCTTCGGGAAAAACTACCCTGACTTTACAT
GCAATCGCCGAAGCGCAGAAAATGGGAGGAATCGCAGCATTTATTGACGCGGAACATGCATTCGACAGACATTACGCTGC
GAAGTTGGGAATCAACCTCGATGATTTGATTATTTCCCAACCGGACAATGGTGAGCAGGCGCTGGAAATTGCAGACAACC
TGATCCGTTCCGGGGCAATCGATATCGTGGTGATCGACTCTGTGGCGGCACTTACGCCAAAAGCGGAAATCGAGGGAGAA
ATGGGTGATTCCAAAATGGGACTCCATGCAAGATTGATGTCGCAGGCGTTGAGAAAATTGACCGCGACCATTTCCAGAAC
AAAATGTACCGTAATTTTCATCAACCAGTTGAGAGAGAAGATCGGTGTAATGTTCGGAAACCCCGAAACTACGACCGGTG
GAAATGCCTTGAAATTCTACGCTTCTGTACGAATCGATATCAGGAAAGCAAGCGCTCCGATCAAGTCGGGAGACGAAGCA
GTAGGAAGCCGAGTGAAGGTAAAAATCGTGAAGAACAAAGTTGCGCCACCTTTCAAGCAGGCGGAATTCGACATCATGTA
CGGAGAGGGAGTTTCTAAAGTCGGAGAAATCCTCGATACTGCGGTTGATATGGGAATCGTGAAGAAAAGCGGATCCTGGT
TCAGCTACGACGACACCAAACTTGGTCAGGGAAGAGACGCAGTAAAAGATATGCTGAAAGACAATCCCGAATTAGCTGAA
GAGCTGGAAGAGAAAATCAAGGAACACATCAAGGAATCCAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.896

100

0.811
  recA Ralstonia pseudosolanacearum GMI1000

63.798

100

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

97.904

0.635
  recA Glaesserella parasuis strain SC1401

64.724

97.605

0.632
  recA Acinetobacter baumannii D1279779

64.11

97.605

0.626
  recA Helicobacter pylori strain NCTC11637

62.84

99.102

0.623
  recA Helicobacter pylori 26695

62.84

99.102

0.623
  recA Acinetobacter baylyi ADP1

62.883

97.605

0.614
  recA Streptococcus mitis NCTC 12261

59.706

100

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

62.27

97.605

0.608
  recA Pseudomonas stutzeri DSM 10701

62.27

97.605

0.608
  recA Neisseria gonorrhoeae MS11

62.229

96.707

0.602
  recA Neisseria gonorrhoeae MS11

62.229

96.707

0.602
  recA Neisseria gonorrhoeae strain FA1090

62.229

96.707

0.602
  recA Streptococcus mitis SK321

60.923

97.305

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.429

97.605

0.59
  recA Vibrio cholerae strain A1552

60.429

97.605

0.59
  recA Lactococcus lactis subsp. cremoris KW2

60.429

97.605

0.59
  recA Streptococcus pneumoniae TIGR4

60.308

97.305

0.587
  recA Streptococcus pneumoniae Rx1

60.308

97.305

0.587
  recA Streptococcus pneumoniae D39

60.308

97.305

0.587
  recA Streptococcus pneumoniae R6

60.308

97.305

0.587
  recA Streptococcus pyogenes NZ131

59.816

97.605

0.584
  recA Streptococcus mutans UA159

58.896

97.605

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

59.443

96.707

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.492

97.904

0.563