Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTO98_RS29450 Genome accession   NZ_CP094527
Coordinates   7065131..7066150 (-) Length   339 a.a.
NCBI ID   WP_243482613.1    Uniprot ID   -
Organism   Mucilaginibacter sp. SMC90     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7060131..7071150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO98_RS29430 (MTO98_29430) - 7061130..7062638 (-) 1509 WP_243482609.1 FAD-binding protein -
  MTO98_RS29435 (MTO98_29435) - 7062645..7063001 (-) 357 WP_243482610.1 Bor family protein -
  MTO98_RS29440 (MTO98_29440) cfa 7063131..7064246 (-) 1116 WP_243482611.1 cyclopropane fatty acyl phospholipid synthase -
  MTO98_RS29445 (MTO98_29445) - 7064388..7064936 (-) 549 WP_243482612.1 transposase -
  MTO98_RS29450 (MTO98_29450) recA 7065131..7066150 (-) 1020 WP_243482613.1 recombinase RecA Machinery gene
  MTO98_RS29455 (MTO98_29455) nth 7066327..7067079 (-) 753 WP_243482614.1 endonuclease III -
  MTO98_RS29460 (MTO98_29460) - 7067382..7067576 (-) 195 WP_243482615.1 hypothetical protein -
  MTO98_RS29465 (MTO98_29465) - 7067841..7068425 (-) 585 WP_112575763.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36750.24 Da        Isoelectric Point: 5.1910

>NTDB_id=670013 MTO98_RS29450 WP_243482613.1 7065131..7066150(-) (recA) [Mucilaginibacter sp. SMC90]
MATTDKNSDKLKALQLTLDKLEKSYGKGTIMKLGDSVIEQTEVISTGSLGLDIALGVNGLPKGRIIEIYGPESSGKTTLA
IHAIAESQKKGGIAAFIDAEHAFDRFYAKKLGVDVENLLISQPDNGEQALEIADNLIRSGAIDILVIDSVAALVPKAEIE
GEMGDSKMGLHARLMSQALRKLTGTISKTGCCCIFINQLRDKIGVMFGNPETTTGGNALKFYASVRLDVRRISQIKDTDE
VSGNRVKVKIVKNKVAPPFRIAEFDIMFGEGISKAGEIIDLGVEYNIIKKAGSWFSYGETRLGQGRDAVKQLILDNPELQ
EELESKIKETVTGESMEEV

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=670013 MTO98_RS29450 WP_243482613.1 7065131..7066150(-) (recA) [Mucilaginibacter sp. SMC90]
ATGGCTACTACAGATAAAAACAGCGATAAATTAAAGGCATTACAGCTTACATTAGATAAGCTGGAAAAATCATACGGCAA
AGGCACCATCATGAAATTGGGCGACTCCGTTATTGAGCAAACTGAAGTTATATCAACTGGCTCATTAGGGCTTGATATTG
CTTTGGGGGTTAACGGTTTACCTAAGGGAAGGATCATTGAGATATACGGGCCTGAATCATCAGGTAAAACAACCTTGGCT
ATCCATGCCATTGCCGAATCGCAAAAGAAAGGCGGCATCGCAGCTTTTATTGATGCGGAGCATGCTTTTGACCGTTTTTA
TGCCAAAAAATTAGGTGTTGATGTTGAAAACCTGCTGATCTCTCAGCCAGATAATGGTGAGCAGGCGCTGGAAATTGCCG
ATAACCTGATCCGTTCGGGTGCTATTGACATCCTTGTTATCGACTCTGTTGCTGCATTGGTACCAAAGGCCGAGATCGAA
GGTGAAATGGGTGATTCAAAAATGGGTTTACATGCCCGTTTAATGTCGCAGGCATTACGTAAGCTAACCGGTACCATCAG
CAAAACCGGATGCTGCTGTATTTTCATTAACCAATTGCGCGATAAGATTGGTGTTATGTTTGGTAACCCCGAAACTACCA
CAGGCGGTAACGCATTGAAGTTTTATGCTTCGGTACGTTTAGATGTACGCCGGATCTCGCAAATTAAAGATACCGATGAG
GTTTCAGGTAACCGTGTAAAAGTTAAGATCGTTAAAAATAAAGTTGCCCCTCCATTCCGTATAGCCGAGTTTGATATCAT
GTTTGGCGAAGGTATTTCAAAAGCAGGCGAAATCATTGATTTGGGGGTTGAATACAACATCATCAAAAAGGCAGGTTCAT
GGTTTAGCTATGGCGAAACCCGCTTGGGCCAGGGCCGTGATGCCGTTAAACAACTGATTCTTGATAACCCTGAACTGCAG
GAAGAACTGGAAAGCAAGATCAAAGAAACTGTAACCGGCGAAAGCATGGAAGAAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.973

98.23

0.717
  recA Ralstonia pseudosolanacearum GMI1000

68.932

91.15

0.628
  recA Neisseria gonorrhoeae MS11

65.635

95.28

0.625
  recA Neisseria gonorrhoeae MS11

65.635

95.28

0.625
  recA Neisseria gonorrhoeae strain FA1090

65.635

95.28

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

64.596

94.985

0.614
  recA Acinetobacter baylyi ADP1

63.692

95.87

0.611
  recA Acinetobacter baumannii D1279779

63.692

95.87

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

97.64

0.608
  recA Helicobacter pylori 26695

63.19

96.165

0.608
  recA Helicobacter pylori strain NCTC11637

63.19

96.165

0.608
  recA Glaesserella parasuis strain SC1401

62.733

94.985

0.596
  recA Pseudomonas stutzeri DSM 10701

60.87

94.985

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

60.938

94.395

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

95.87

0.575
  recA Vibrio cholerae strain A1552

60

95.87

0.575
  recA Streptococcus mitis NCTC 12261

60

95.87

0.575
  recA Streptococcus mitis SK321

60

95.87

0.575
  recA Streptococcus pneumoniae Rx1

57.692

99.705

0.575
  recA Streptococcus pneumoniae D39

57.692

99.705

0.575
  recA Streptococcus pneumoniae R6

57.692

99.705

0.575
  recA Streptococcus pneumoniae TIGR4

57.692

99.705

0.575
  recA Streptococcus pyogenes NZ131

59.568

95.575

0.569
  recA Lactococcus lactis subsp. cremoris KW2

58.182

97.345

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

96.46

0.56
  recA Streptococcus mutans UA159

58.025

95.575

0.555