Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MST30_RS05280 Genome accession   NZ_CP094494
Coordinates   1182933..1183937 (+) Length   334 a.a.
NCBI ID   WP_243473339.1    Uniprot ID   -
Organism   Winogradskyella sp. MH6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1177933..1188937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MST30_RS05260 - 1178961..1179191 (-) 231 WP_243473335.1 ferredoxin -
  MST30_RS05265 - 1179191..1180435 (-) 1245 WP_243473336.1 peptidase U32 family protein -
  MST30_RS05270 - 1180455..1181459 (-) 1005 WP_243473337.1 radical SAM protein -
  MST30_RS05275 - 1181460..1182533 (-) 1074 WP_243473338.1 rhodanese-related sulfurtransferase -
  MST30_RS05280 recA 1182933..1183937 (+) 1005 WP_243473339.1 recombinase RecA Machinery gene
  MST30_RS05285 - 1184038..1184481 (+) 444 WP_243473340.1 hypothetical protein -
  MST30_RS05290 - 1184506..1185051 (+) 546 WP_243473341.1 RNA polymerase sigma factor -
  MST30_RS05295 - 1185053..1186615 (+) 1563 WP_243473342.1 hypothetical protein -
  MST30_RS05300 - 1186714..1187460 (-) 747 WP_243473343.1 lysophospholipid acyltransferase family protein -
  MST30_RS05305 trpS 1187584..1188552 (+) 969 WP_243473344.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36171.34 Da        Isoelectric Point: 5.3204

>NTDB_id=669861 MST30_RS05280 WP_243473339.1 1182933..1183937(+) (recA) [Winogradskyella sp. MH6]
MSSEKDAKLKALKLTLDKLDKAYGKGTVMKMSDQAIVDVDAISSGSLGLDIALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAEKLGVDLENLIISQPDNGEQALEIADNLVRSGAIDIVVVDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTASISKTNCTMIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSNGDV
MGNKTRVKVVKNKVAPPFRTAEFDIMYGEGVSKVGEVLDLAVEHDIVKKSGSWFSYEDTKLGQGRDAVKSLIKDNPDLMD
ELEEKVRAIINDNQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=669861 MST30_RS05280 WP_243473339.1 1182933..1183937(+) (recA) [Winogradskyella sp. MH6]
ATGAGTAGTGAAAAAGATGCAAAGTTAAAAGCGTTAAAATTAACTTTAGACAAGTTAGATAAAGCCTACGGAAAAGGAAC
CGTAATGAAAATGAGCGATCAGGCCATAGTAGATGTAGATGCAATTTCATCTGGTTCTTTAGGGTTAGACATTGCTTTAG
GAGTTGGTGGTTACCCAAGAGGAAGGGTAATTGAAATATATGGTCCTGAATCTTCAGGTAAAACAACATTAACGCTACAT
GCTATTGCCGAAGCTCAGAAAGCTGGTGGTATTGCTGCATTTATTGATGCTGAACATGCTTTTGACCGTTTTTATGCAGA
AAAACTTGGTGTTGATTTAGAAAATCTAATCATCTCTCAACCAGATAATGGTGAGCAAGCCTTAGAAATTGCAGATAATT
TGGTTAGATCTGGAGCTATTGACATCGTTGTAGTTGATTCTGTTGCAGCTTTAACACCAAAGAGTGAAATTGAAGGAGAA
ATGGGAGACTCTAAAATGGGCTTGCATGCACGTTTAATGTCTCAGGCTTTGAGAAAACTTACCGCTTCAATCAGCAAAAC
CAATTGCACCATGATATTCATTAACCAATTACGTGAAAAAATTGGTGTAATGTTTGGAAATCCAGAAACCACTACTGGTG
GTAATGCTTTAAAATTCTATGCATCTGTTCGTTTAGACATAAGACGTTCAACTCAAATTAAAGACAGTAATGGAGATGTA
ATGGGTAATAAGACCAGAGTTAAGGTTGTAAAAAACAAAGTTGCACCACCTTTTAGAACTGCCGAATTTGATATTATGTA
TGGTGAAGGAGTTTCTAAGGTAGGAGAAGTTTTAGACTTAGCCGTTGAGCACGATATTGTAAAAAAGAGTGGTTCTTGGT
TTAGCTACGAAGACACAAAACTTGGTCAGGGACGAGATGCTGTTAAATCTTTAATTAAAGATAATCCTGATTTAATGGAC
GAATTAGAAGAAAAAGTTCGAGCCATAATCAATGATAATCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

77.039

99.102

0.763
  recA Neisseria gonorrhoeae MS11

65.231

97.305

0.635
  recA Neisseria gonorrhoeae strain FA1090

65.231

97.305

0.635
  recA Neisseria gonorrhoeae MS11

65.231

97.305

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

66.562

94.91

0.632
  recA Acinetobacter baylyi ADP1

64.596

96.407

0.623
  recA Ralstonia pseudosolanacearum GMI1000

66.99

92.515

0.62
  recA Glaesserella parasuis strain SC1401

62.727

98.802

0.62
  recA Helicobacter pylori strain NCTC11637

62.805

98.204

0.617
  recA Acinetobacter baumannii D1279779

64.375

95.808

0.617
  recA Helicobacter pylori 26695

62.5

98.204

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.848

96.707

0.608
  recA Streptococcus mitis NCTC 12261

62.617

96.108

0.602
  recA Streptococcus mitis SK321

62.305

96.108

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

61.728

97.006

0.599
  recA Streptococcus pyogenes NZ131

61.538

97.305

0.599
  recA Streptococcus pneumoniae D39

61.491

96.407

0.593
  recA Streptococcus pneumoniae TIGR4

61.491

96.407

0.593
  recA Streptococcus pneumoniae Rx1

61.491

96.407

0.593
  recA Streptococcus pneumoniae R6

61.491

96.407

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.991

96.707

0.59
  recA Vibrio cholerae strain A1552

60.991

96.707

0.59
  recA Lactococcus lactis subsp. cremoris KW2

61.18

96.407

0.59
  recA Pseudomonas stutzeri DSM 10701

61.059

96.108

0.587
  recA Streptococcus mutans UA159

59.451

98.204

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.658

99.701

0.575