Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTP43_RS01410 Genome accession   NZ_CP094472
Coordinates   290885..292063 (+) Length   392 a.a.
NCBI ID   WP_112090925.1    Uniprot ID   -
Organism   Faecalibacterium sp. IP-1-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 285885..297063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP43_RS01390 (MTP43_01390) - 286408..287112 (+) 705 WP_249235006.1 response regulator transcription factor -
  MTP43_RS01395 (MTP43_01395) - 287202..288626 (+) 1425 WP_249235007.1 HAMP domain-containing sensor histidine kinase -
  MTP43_RS01400 (MTP43_01400) - 288856..289803 (+) 948 WP_249235008.1 DUF1385 domain-containing protein -
  MTP43_RS01405 (MTP43_01405) - 289797..290768 (+) 972 WP_249235009.1 HemK/PrmC family methyltransferase -
  MTP43_RS01410 (MTP43_01410) recA 290885..292063 (+) 1179 WP_112090925.1 recombinase RecA Machinery gene
  MTP43_RS01415 (MTP43_01415) - 292064..292570 (+) 507 WP_249235010.1 RecX family transcriptional regulator -
  MTP43_RS01420 (MTP43_01420) rimO 292627..293952 (+) 1326 WP_015537255.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MTP43_RS01425 (MTP43_01425) pgsA 293973..294572 (+) 600 WP_015537256.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MTP43_RS01430 (MTP43_01430) - 295326..296489 (-) 1164 WP_223473967.1 trigger factor -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 41754.61 Da        Isoelectric Point: 5.5718

>NTDB_id=669758 MTP43_RS01410 WP_112090925.1 290885..292063(+) (recA) [Faecalibacterium sp. IP-1-18]
MAKNQNNNVAPATQKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASMQVDAISTGSLGLDLALGVGGVPRGRIIEVY
GPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLKDNPEIANDIEGQIRANADKLYATRRPAGRAAAAAAEKPADPAAAKEPVVKAPARSSESELDIMVED

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=669758 MTP43_RS01410 WP_112090925.1 290885..292063(+) (recA) [Faecalibacterium sp. IP-1-18]
ATGGCAAAAAATCAGAACAACAACGTTGCACCGGCCACCCAAAAGACCGAGCCGGAAGCCAAGAAGGACGCGCTGGCTAC
GGCGCTGGCGCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTCATGAAGCTGGGCGACAACGCCTCCATGCAGGTGGATG
CCATTTCCACCGGCAGTCTGGGGCTGGATCTGGCGCTGGGCGTGGGCGGCGTGCCGCGCGGGCGCATCATCGAGGTGTAC
GGCCCGGAATCCAGCGGTAAGACCACGCTGGCACTGCACATCCTTGCTGAAGCCCAGAAGAAGGGCGGCGAGGTGGCCTT
TATCGACGTTGAGCACGCACTGGACCCCACCTATGCCGAGGCGCTGGGTGTGGATATCAACAACCTGCTGGTCAGCCAGC
CGGACACCGGCGAGCAGGCCATGGAGATCTGCGAAGCACTGGTGCGCTCCGGTGCCATCGACGCCATCGTAGTGGACTCG
GTAGCCGCCATGGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCATGTGGGTCTGCAGGCACGTCTGATGAG
TCAGGCCATGCGCAAGCTGACCAGCGTCATCGGCAAGACCAACACGGTCTGCGTGTTCATCAACCAGCTGCGTGAGAAGG
TGGGCGTCATGTACGGCAACCCGGAGGTGACCACCGGCGGCCGCGCCCTGAAATACTACGCCTCGGTGCGTATCGACATC
CGCCGCGTGGAGGGTCTGAAGGACTCCTCCGGCCAGTTCATCGGCAACCACACCCGTGCCAAGATCGTCAAGAACAAGGT
GGCTCCGCCGTTCCGTGAAGCCGAGTTCGACATCATGTTCGGTGAGGGCATCTCCAAAATGAGCGAGCTCATTGATGTGG
GCGTCAAGCTGGGCATCGTGCAGAAGAGCGGCGCATGGTTCAACTACGGCGATATCCGTCTGGGTCAGGGCCGCGACAAC
GCCAAGCAGTTCTTAAAGGATAACCCCGAGATCGCCAATGACATCGAGGGTCAGATCCGCGCCAACGCCGATAAGCTGTA
CGCCACCCGCCGCCCGGCAGGCCGCGCCGCAGCCGCCGCAGCGGAGAAGCCCGCCGACCCTGCCGCCGCAAAAGAGCCGG
TGGTCAAGGCACCCGCCCGCAGCAGCGAGAGCGAGCTGGATATCATGGTGGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

67.492

82.398

0.556
  recA Helicobacter pylori 26695

67.183

82.398

0.554
  recA Glaesserella parasuis strain SC1401

63.081

87.755

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

82.143

0.548
  recA Pseudomonas stutzeri DSM 10701

61.494

88.776

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

81.888

0.536
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

85.204

0.533
  recA Streptococcus pyogenes NZ131

60.058

87.5

0.526
  recA Neisseria gonorrhoeae strain FA1090

64.174

81.888

0.526
  recA Neisseria gonorrhoeae MS11

64.174

81.888

0.526
  recA Neisseria gonorrhoeae MS11

64.174

81.888

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

82.143

0.52
  recA Vibrio cholerae strain A1552

63.354

82.143

0.52
  recA Streptococcus mutans UA159

61.631

84.439

0.52
  recA Lactococcus lactis subsp. cremoris KW2

58.721

87.755

0.515
  recA Streptococcus mitis NCTC 12261

61.92

82.398

0.51
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

81.888

0.508
  recA Streptococcus mitis SK321

61.61

82.398

0.508
  recA Acinetobacter baylyi ADP1

62.187

81.633

0.508
  recA Ralstonia pseudosolanacearum GMI1000

63.666

79.337

0.505
  recA Acinetobacter baumannii D1279779

61.491

82.143

0.505
  recA Streptococcus pneumoniae D39

61.111

82.653

0.505
  recA Streptococcus pneumoniae Rx1

61.111

82.653

0.505
  recA Streptococcus pneumoniae R6

61.111

82.653

0.505
  recA Streptococcus pneumoniae TIGR4

61.111

82.653

0.505
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.305

86.99

0.49