Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTP39_RS01925 Genome accession   NZ_CP094469
Coordinates   409026..410201 (+) Length   391 a.a.
NCBI ID   WP_249241223.1    Uniprot ID   -
Organism   Faecalibacterium sp. I3-3-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 404026..415201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP39_RS01905 (MTP39_01905) - 404593..405297 (+) 705 WP_249241219.1 response regulator transcription factor -
  MTP39_RS01910 (MTP39_01910) - 405442..406866 (+) 1425 WP_249241220.1 HAMP domain-containing sensor histidine kinase -
  MTP39_RS01915 (MTP39_01915) - 406998..407945 (+) 948 WP_249241221.1 DUF1385 domain-containing protein -
  MTP39_RS01920 (MTP39_01920) - 407939..408910 (+) 972 WP_249241222.1 HemK/PrmC family methyltransferase -
  MTP39_RS01925 (MTP39_01925) recA 409026..410201 (+) 1176 WP_249241223.1 recombinase RecA Machinery gene
  MTP39_RS01930 (MTP39_01930) - 410202..410705 (+) 504 WP_249241224.1 RecX family transcriptional regulator -
  MTP39_RS01935 (MTP39_01935) rimO 411212..412537 (+) 1326 WP_249241225.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MTP39_RS01940 (MTP39_01940) pgsA 412558..413157 (+) 600 WP_249241226.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MTP39_RS01945 (MTP39_01945) - 413822..414985 (-) 1164 WP_249241227.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 41755.64 Da        Isoelectric Point: 5.5747

>NTDB_id=669719 MTP39_RS01925 WP_249241223.1 409026..410201(+) (recA) [Faecalibacterium sp. I3-3-33]
MAKNQNNNVAPATQKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASMQVDAISTGSLGLDLALGVGGVPRGRIIEVY
GPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLKDNPEIANDIEGQIRANADKLYATRRPAGRAAAAVEKPAEPAAAKEPVVKAPTRSSESELDIMVED

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=669719 MTP39_RS01925 WP_249241223.1 409026..410201(+) (recA) [Faecalibacterium sp. I3-3-33]
ATGGCAAAAAATCAGAACAACAACGTTGCACCGGCCACCCAAAAGACCGAGCCGGAAGCCAAGAAGGACGCGCTGGCTAC
GGCGCTGGCGCAGATCGAAAAGCAGTTCGGCAAGGGCGCCGTTATGAAACTGGGCGACAACGCCTCCATGCAGGTGGATG
CCATTTCCACCGGCAGTCTGGGGCTGGATCTGGCGCTGGGCGTGGGCGGTGTGCCGCGCGGACGCATCATCGAGGTGTAC
GGCCCGGAATCCAGCGGTAAGACCACGCTGGCACTGCACATCCTTGCCGAAGCCCAGAAGAAGGGCGGCGAGGTGGCCTT
TATCGACGTTGAGCACGCACTGGACCCCACCTATGCCGAGGCACTGGGCGTGGACATCAACAACCTGCTGGTCAGCCAGC
CGGACACCGGCGAGCAGGCCATGGAGATCTGCGAAGCACTGGTGCGCTCCGGTGCCATTGATGCCATCGTAGTGGACTCG
GTAGCTGCCATGGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCATGTGGGCTTGCAGGCACGTCTGATGAG
TCAGGCCATGCGCAAGCTGACCAGCGTCATCGGCAAGACCAACACGGTCTGCGTGTTCATCAACCAGCTGCGCGAGAAGG
TGGGCGTCATGTACGGTAACCCGGAGGTGACCACCGGCGGCCGCGCCCTGAAATACTACGCCTCAGTGCGTATCGACATC
CGCCGCGTGGAGGGCCTGAAAGACTCCTCCGGCCAGTTCATCGGCAATCACACCCGCGCCAAGATCGTCAAGAACAAGGT
AGCTCCGCCGTTCCGTGAGGCCGAGTTCGACATCATGTTCGGCGAGGGCATCTCCAAAATGAGCGAGCTCATTGACGTGG
GCGTCAAGCTGGGCATCGTGCAGAAGAGCGGCGCATGGTTCAACTACGGCGATATCCGTCTGGGTCAGGGCCGCGACAAC
GCCAAGCAGTTCTTAAAGGATAACCCCGAGATCGCCAATGACATCGAGGGGCAGATCCGCGCCAACGCCGATAAGCTGTA
CGCCACCCGCCGCCCGGCAGGCCGCGCCGCCGCCGCAGTGGAGAAGCCCGCCGAGCCCGCCGCCGCAAAGGAGCCGGTGG
TCAAGGCACCCACCCGCAGCAGCGAGAGCGAGCTGGACATCATGGTGGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

67.492

82.609

0.558
  recA Helicobacter pylori 26695

67.183

82.609

0.555
  recA Glaesserella parasuis strain SC1401

63.081

87.98

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

82.353

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

82.097

0.537
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

85.422

0.535
  recA Streptococcus pyogenes NZ131

60.058

87.724

0.527
  recA Neisseria gonorrhoeae MS11

64.174

82.097

0.527
  recA Neisseria gonorrhoeae MS11

64.174

82.097

0.527
  recA Neisseria gonorrhoeae strain FA1090

64.174

82.097

0.527
  recA Pseudomonas stutzeri DSM 10701

63.467

82.609

0.524
  recA Acinetobacter baumannii D1279779

58.621

89.003

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

82.353

0.522
  recA Vibrio cholerae strain A1552

63.354

82.353

0.522
  recA Streptococcus mutans UA159

61.631

84.655

0.522
  recA Lactococcus lactis subsp. cremoris KW2

58.721

87.98

0.517
  recA Streptococcus mitis NCTC 12261

61.92

82.609

0.512
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

82.097

0.509
  recA Streptococcus mitis SK321

61.61

82.609

0.509
  recA Acinetobacter baylyi ADP1

62.187

81.841

0.509
  recA Ralstonia pseudosolanacearum GMI1000

63.666

79.54

0.506
  recA Streptococcus pneumoniae D39

61.111

82.864

0.506
  recA Streptococcus pneumoniae Rx1

61.111

82.864

0.506
  recA Streptococcus pneumoniae R6

61.111

82.864

0.506
  recA Streptococcus pneumoniae TIGR4

61.111

82.864

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.305

87.212

0.491