Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTP36_RS14095 Genome accession   NZ_CP094467
Coordinates   2871510..2872682 (-) Length   390 a.a.
NCBI ID   WP_117553723.1    Uniprot ID   -
Organism   Faecalibacterium sp. I4-1-79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2866510..2877682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP36_RS14075 (MTP36_14075) - 2866653..2867816 (+) 1164 WP_249251462.1 trigger factor -
  MTP36_RS14080 (MTP36_14080) pgsA 2868478..2869077 (-) 600 WP_249251464.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MTP36_RS14085 (MTP36_14085) rimO 2869098..2870423 (-) 1326 WP_055187124.1 30S ribosomal protein S12 methylthiotransferase RimO -
  MTP36_RS14090 (MTP36_14090) - 2871000..2871509 (-) 510 WP_249251466.1 RecX family transcriptional regulator -
  MTP36_RS14095 (MTP36_14095) recA 2871510..2872682 (-) 1173 WP_117553723.1 recombinase RecA Machinery gene
  MTP36_RS14100 (MTP36_14100) - 2872799..2873770 (-) 972 WP_249251468.1 HemK/PrmC family methyltransferase -
  MTP36_RS14105 (MTP36_14105) - 2873764..2874711 (-) 948 WP_097779119.1 DUF1385 domain-containing protein -
  MTP36_RS14110 (MTP36_14110) - 2874844..2876268 (-) 1425 WP_249251472.1 HAMP domain-containing sensor histidine kinase -
  MTP36_RS14115 (MTP36_14115) - 2876359..2877063 (-) 705 WP_249251474.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 41684.56 Da        Isoelectric Point: 5.5747

>NTDB_id=669702 MTP36_RS14095 WP_117553723.1 2871510..2872682(-) (recA) [Faecalibacterium sp. I4-1-79]
MAKNQNNNVAPATQKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASMQVDAISTGSLGLDLALGVGGVPRGRIIEVY
GPESSGKTTLALHILAEAQKKGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVDS
VAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRIDI
RRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGRDN
AKQFLKDNPEIANDIEGQIRANADKLYATRRPAGRAAAVEKPAEPAAAKEPVVKAPTRSSESELDIMVED

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=669702 MTP36_RS14095 WP_117553723.1 2871510..2872682(-) (recA) [Faecalibacterium sp. I4-1-79]
ATGGCAAAAAATCAGAACAACAACGTTGCACCGGCCACCCAAAAGACCGAGCCGGAAGCCAAGAAGGACGCGCTGGCTAC
GGCGCTGGCGCAGATCGAAAAGCAGTTCGGCAAGGGCGCCGTCATGAAGCTGGGCGACAACGCCTCCATGCAGGTGGATG
CCATTTCCACCGGCAGTCTGGGGCTGGATCTGGCGCTGGGCGTGGGCGGTGTGCCGCGCGGCCGCATCATCGAGGTGTAC
GGCCCGGAATCCAGCGGTAAGACCACGCTGGCACTGCATATCCTTGCCGAAGCCCAGAAGAAGGGCGGCGAGGTGGCCTT
TATCGACGTTGAGCACGCACTGGACCCCACCTATGCCGAGGCACTGGGCGTGGATATCAACAACCTGCTGGTCAGCCAGC
CGGATACCGGCGAGCAGGCCATGGAGATCTGCGAAGCGCTGGTGCGCTCCGGTGCCATTGATGCCATCGTAGTGGACTCG
GTGGCCGCTATGGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCATGTGGGCTTGCAGGCACGTCTGATGAG
TCAGGCCATGCGTAAACTGACCAGCGTCATCGGCAAGACCAACACGGTCTGCGTGTTCATCAACCAGCTGCGTGAGAAGG
TGGGCGTCATGTACGGCAACCCGGAGGTGACCACCGGCGGCCGTGCCCTGAAGTACTACGCCTCGGTGCGTATCGACATC
CGCCGCGTGGAGGGCCTGAAGGACTCCTCCGGCCAGTTTATCGGCAACCACACCCGTGCCAAGATCGTCAAGAACAAGGT
GGCTCCGCCGTTCCGTGAGGCCGAGTTCGATATCATGTTCGGCGAGGGCATCTCCAAAATGAGCGAGCTTATCGATGTGG
GCGTCAAGCTGGGTATCGTGCAGAAGAGCGGCGCATGGTTCAACTACGGCGATATCCGTCTGGGTCAGGGCCGCGACAAC
GCCAAGCAGTTCTTAAAGGATAACCCCGAGATCGCCAATGACATTGAGGGGCAGATCCGCGCCAACGCTGATAAGCTGTA
CGCCACCCGCCGCCCGGCAGGCCGCGCCGCCGCAGTGGAGAAGCCCGCCGAGCCCGCCGCCGCAAAGGAGCCGGTGGTCA
AGGCTCCCACCCGCAGCAGCGAGAGCGAGCTGGACATCATGGTGGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

67.492

82.821

0.559
  recA Helicobacter pylori 26695

67.183

82.821

0.556
  recA Glaesserella parasuis strain SC1401

63.081

88.205

0.556
  recA Bacillus subtilis subsp. subtilis str. 168

66.77

82.564

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

82.308

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

85.641

0.536
  recA Streptococcus pyogenes NZ131

60.058

87.949

0.528
  recA Neisseria gonorrhoeae MS11

64.174

82.308

0.528
  recA Neisseria gonorrhoeae MS11

64.174

82.308

0.528
  recA Neisseria gonorrhoeae strain FA1090

64.174

82.308

0.528
  recA Pseudomonas stutzeri DSM 10701

63.467

82.821

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

82.564

0.523
  recA Vibrio cholerae strain A1552

63.354

82.564

0.523
  recA Streptococcus mutans UA159

61.631

84.872

0.523
  recA Lactococcus lactis subsp. cremoris KW2

58.721

88.205

0.518
  recA Streptococcus mitis NCTC 12261

61.92

82.821

0.513
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

82.308

0.51
  recA Streptococcus mitis SK321

61.61

82.821

0.51
  recA Acinetobacter baylyi ADP1

62.187

82.051

0.51
  recA Ralstonia pseudosolanacearum GMI1000

63.666

79.744

0.508
  recA Acinetobacter baumannii D1279779

61.491

82.564

0.508
  recA Streptococcus pneumoniae D39

61.111

83.077

0.508
  recA Streptococcus pneumoniae Rx1

61.111

83.077

0.508
  recA Streptococcus pneumoniae R6

61.111

83.077

0.508
  recA Streptococcus pneumoniae TIGR4

61.111

83.077

0.508
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.305

87.436

0.492