Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MRB56_RS03550 Genome accession   NZ_CP094345
Coordinates   741669..742754 (+) Length   361 a.a.
NCBI ID   WP_073435655.1    Uniprot ID   A0A1M7HHI6
Organism   Halomonas cupida strain J9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 736669..747754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRB56_RS03530 (MRB56_03495) fdxA 736897..737220 (-) 324 WP_073435658.1 ferredoxin FdxA -
  MRB56_RS03535 (MRB56_03500) mutS 737734..740322 (-) 2589 WP_413615883.1 DNA mismatch repair protein MutS -
  MRB56_RS03540 (MRB56_03505) - 740750..740908 (+) 159 WP_021819908.1 YqaE/Pmp3 family membrane protein -
  MRB56_RS03545 (MRB56_03510) - 741009..741500 (+) 492 WP_413615885.1 CinA family protein -
  MRB56_RS03550 (MRB56_03515) recA 741669..742754 (+) 1086 WP_073435655.1 recombinase RecA Machinery gene
  MRB56_RS03555 (MRB56_03520) - 742870..743358 (+) 489 WP_413616640.1 regulatory protein RecX -
  MRB56_RS03560 (MRB56_03525) - 743466..744992 (-) 1527 WP_413615886.1 malonate--CoA ligase -
  MRB56_RS03565 (MRB56_03530) - 744989..746344 (-) 1356 WP_413615887.1 malonyl-CoA decarboxylase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38530.88 Da        Isoelectric Point: 4.8272

>NTDB_id=669128 MRB56_RS03550 WP_073435655.1 741669..742754(+) (recA) [Halomonas cupida strain J9]
MAQDENRTKALNAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDVALGIGGLPYGRVVEIFGPESSGKTTLTLSV
IAQAQREGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEICDMLVRSGGVDVIIIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVVG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVIDLGVQCKLVDKAGAWYSYQGNKIGQGKANSAQFLEDNPAIMNEI
ETQIRAQLLAQPNAKPEDQDAAGKDAAAEVAVGEDLGDDLL

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=669128 MRB56_RS03550 WP_073435655.1 741669..742754(+) (recA) [Halomonas cupida strain J9]
ATGGCGCAGGATGAAAACCGTACCAAGGCACTGAATGCCGCTCTTTCCCAGATCGACCGCCAGTTCGGCAAGGGCACGGT
CATGCGGTTGGGTGATGCACCGCGTGTGGTGATGCCTTCGGTCTCGACGGGTTCTCTGGGGCTGGATGTCGCCCTGGGGA
TCGGTGGCCTGCCCTATGGTCGTGTGGTCGAGATCTTTGGTCCGGAATCCTCGGGCAAGACGACGCTTACCCTGTCGGTG
ATTGCTCAGGCACAGCGTGAGGGCAAGACCTGCGCCTTCATCGATGCCGAGCATGCGCTGGACCCCAGCTATGCCGAGAA
GCTTGGCGTCAACCTGGATGACCTGTTGGTCTCGCAGCCTGACACCGGTGAACAGGCGCTGGAGATCTGCGACATGCTGG
TGCGTTCCGGTGGTGTCGATGTGATCATCATCGACTCCGTGGCGGCGCTGACGCCTCGTGCCGAGATCGAGGGCGAAATG
GGCGACTCTCATGTGGGCCTGCAGGCTCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAA
CTGCATGGTGGTGTTCATCAACCAGATCCGCATGAAGATCGGGGTCATGTTCGGCAGCCCCGAGACCACGACCGGGGGTA
ATGCTCTCAAGTTCTACGCCAGTGTCCGTCTGGATATTCGTCGTACCGGGTCGGTCAAGCAGGGCGACGAGGTCGTGGGT
AACGAGACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAA
GGGCATCTATCATGCCGGTGAAGTGATCGACCTCGGTGTGCAGTGCAAGCTGGTCGACAAGGCCGGTGCCTGGTACAGCT
ATCAGGGCAACAAGATCGGCCAGGGCAAGGCCAATTCGGCGCAGTTCCTCGAGGACAACCCGGCGATCATGAACGAGATC
GAGACCCAGATTCGTGCCCAACTGCTGGCTCAGCCGAACGCCAAACCGGAGGATCAGGACGCCGCCGGAAAGGATGCAGC
TGCAGAGGTCGCAGTGGGCGAAGACCTGGGCGACGACCTCCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M7HHI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

79.71

95.568

0.762
  recA Acinetobacter baylyi ADP1

73.41

95.845

0.704
  recA Acinetobacter baumannii D1279779

75.46

90.305

0.681
  recA Vibrio cholerae strain A1552

72.424

91.413

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.424

91.413

0.662
  recA Glaesserella parasuis strain SC1401

70.606

91.413

0.645
  recA Ralstonia pseudosolanacearum GMI1000

72.381

87.258

0.632
  recA Neisseria gonorrhoeae MS11

69.969

89.474

0.626
  recA Neisseria gonorrhoeae MS11

69.969

89.474

0.626
  recA Neisseria gonorrhoeae strain FA1090

69.969

89.474

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

90.305

0.576
  recA Helicobacter pylori 26695

61.128

93.352

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.128

93.352

0.571
  recA Helicobacter pylori strain NCTC11637

60.534

93.352

0.565
  recA Streptococcus mitis NCTC 12261

55.956

100

0.56
  recA Streptococcus mitis SK321

55.278

99.723

0.551
  recA Streptococcus pneumoniae Rx1

54.67

100

0.551
  recA Streptococcus pneumoniae D39

54.67

100

0.551
  recA Streptococcus pneumoniae R6

54.67

100

0.551
  recA Streptococcus pneumoniae TIGR4

54.67

100

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

88.643

0.551
  recA Streptococcus mutans UA159

55.491

95.845

0.532
  recA Latilactobacillus sakei subsp. sakei 23K

58.282

90.305

0.526
  recA Streptococcus pyogenes NZ131

57.012

90.859

0.518
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.881

90.582

0.515
  recA Lactococcus lactis subsp. cremoris KW2

54.938

89.751

0.493

Multiple sequence alignment