Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OG397_RS13860 Genome accession   NZ_CP108980
Coordinates   3348436..3350652 (-) Length   738 a.a.
NCBI ID   WP_328553198.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00728     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3343436..3355652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG397_RS13830 (OG397_13815) rnc 3344219..3345076 (-) 858 WP_328553195.1 ribonuclease III -
  OG397_RS13835 (OG397_13820) rpmF 3345096..3345269 (-) 174 WP_006139588.1 50S ribosomal protein L32 -
  OG397_RS13840 (OG397_13825) - 3345272..3345916 (-) 645 WP_328553196.1 YceD family protein -
  OG397_RS13845 (OG397_13830) - 3346092..3347174 (-) 1083 WP_328553197.1 ATP synthase F0 subunit B -
  OG397_RS13850 (OG397_13835) coaD 3347274..3347753 (-) 480 WP_328558097.1 pantetheine-phosphate adenylyltransferase -
  OG397_RS13855 (OG397_13840) rsmD 3347780..3348406 (-) 627 WP_328558098.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OG397_RS13860 (OG397_13845) recG 3348436..3350652 (-) 2217 WP_328553198.1 ATP-dependent DNA helicase RecG Machinery gene
  OG397_RS13865 (OG397_13850) - 3350819..3352657 (+) 1839 WP_405916004.1 HSP90 family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79630.29 Da        Isoelectric Point: 6.4275

>NTDB_id=668352 OG397_RS13860 WP_328553198.1 3348436..3350652(-) (recG) [Streptomyces sp. NBC_00728]
MDLVPVLEEPLKKALGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPLDEHVTVVAQVADARLATFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHKDLLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGDGEEAVESVDSWAG
ALIPIYPATAKLESWKIAKSVQTVLPSVQEAVDPLPDSLRDGRGLVTLPEALLKVHRPHTKADIHDARARLKWDEAFVLQ
VALARRRHADAQLPAVARVPAPDGMLTAFDAKLPFTLTEGQRKVSKEIFDGLATEHPMHRLLQGEVGSGKTMVALRAMLA
VVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAQGGMLGGAEHATKVVLLTGSMGAAGRRQALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVP
AADKPHFLARAWERVREEVENGHQAYVVCPRIGDGDDDPKKGAKKKSPEDEAEKRPPLAVLDVAAQLAEGPLQGLKIEVL
HGRMHPDDKDAVMRRFAAGETGVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMPEA
SPARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEIIAEAREEATAVVAADPELTGLPGLR
TALDALLDEEREQYLDKG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=668352 OG397_RS13860 WP_328553198.1 3348436..3350652(-) (recG) [Streptomyces sp. NBC_00728]
ATGGATCTCGTGCCCGTGCTCGAAGAACCACTGAAGAAGGCGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTGCTGCACCACTACCCGCGCAGATACGAGGAGCGCGGGCAGCTCACCCACCTCGCCG
ACCTGCCGCTGGACGAGCATGTGACGGTGGTCGCCCAGGTCGCCGACGCGCGCCTGGCCACCTTCGCCTCGTCCAAGGCG
CCCCGCGGCAAGGGGCAGCGCCTCGAAGTCACCATCACGGACGGCAGCGGCCGCCTCCAGCTCGTCTTCTTCGGGCACGG
CGTGCACAAGCCCCACAAGGACCTGCTCCCCGGCACCCGCGCGATGTTCTCCGGCAAGGTGTCCGTCTTCAACCGCCGCC
TCCAGCTCGCCCATCCGGCGTACGAACTGCTGCGCGGCGACGGCGAGGAGGCCGTGGAGAGCGTCGACAGCTGGGCGGGC
GCCCTCATCCCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTCGGTGCAGACGGTGCTGCCGAG
CGTCCAGGAAGCGGTCGACCCCCTCCCGGACTCGCTGCGCGACGGCCGCGGCCTGGTCACCCTCCCCGAGGCACTTCTCA
AGGTCCACCGCCCGCACACCAAGGCGGACATCCACGACGCCCGCGCCCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAG
GTCGCCCTGGCCCGCCGCCGCCACGCCGACGCCCAGCTCCCCGCCGTCGCCCGCGTCCCCGCACCGGACGGCATGCTCAC
CGCCTTCGACGCCAAGCTCCCCTTCACCCTCACCGAGGGCCAGCGGAAGGTCTCCAAGGAGATCTTCGACGGCCTCGCCA
CCGAACACCCGATGCACCGACTGCTGCAGGGGGAGGTGGGCAGCGGGAAGACGATGGTCGCCCTGCGCGCCATGCTCGCC
GTCGTCGACGCGGGTGGGCAGGCCGCGATGCTCGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGATCACCGA
GATGATGGGCGAGCTGGCGCAGGGCGGCATGCTCGGCGGGGCCGAGCACGCGACGAAGGTCGTGCTGCTCACCGGCTCCA
TGGGGGCGGCGGGCCGGCGCCAGGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACCCACGCCCTG
ATCGAGGACAAGGTCCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAGCAGCACCGCTTCGGTGTCGAGCAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTCCTGGTCATGACCGCCACGCCCATCCCGCGCACGGTCGCGATGA
CGGTCTTCGGCGATCTGGAGACCTCCGTCCTCGACCAGCTCCCCGCCGGGCGCTCCCCGATCGCCAGCCATGTCGTCCCC
GCCGCGGACAAGCCGCACTTCCTCGCACGCGCGTGGGAGCGCGTGCGCGAGGAAGTGGAGAACGGCCATCAGGCGTACGT
CGTCTGCCCCCGCATCGGCGACGGGGACGACGACCCGAAGAAGGGCGCCAAGAAGAAGTCCCCCGAGGACGAGGCGGAGA
AGCGTCCGCCGCTGGCCGTCCTCGACGTCGCCGCCCAGCTCGCCGAGGGCCCCCTCCAGGGCCTCAAGATCGAAGTCCTG
CACGGCCGGATGCACCCCGACGACAAGGACGCCGTCATGCGCCGCTTCGCCGCGGGCGAGACGGGCGTCCTGGTGGCGAC
GACCGTGATCGAGGTCGGCGTGAACGTGCCGAACGCCACCGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCC
AGCTCCACCAGTTGCGCGGCCGCGTCGGCCGCGGCTCGGCCGCCGGGCTCTGCCTGCTGGTCTCCGAGATGCCGGAGGCG
AGCCCGGCCCGTCAGCGGCTGAACGCGGTGGCCTCGACCCTGGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACAGCG
CCGCGAGGGCGATGTCCTCGGCCAGGCCCAGTCCGGTGTCCGCTCCTCGCTGCGCATGCTCGCCGTCATCGACGACGAGG
AGATCATCGCGGAGGCCCGCGAGGAGGCCACCGCCGTCGTCGCGGCGGACCCGGAGCTCACGGGCCTCCCCGGCCTGCGC
ACCGCCCTGGACGCCCTCCTGGACGAGGAACGGGAGCAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(550-625)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-713)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(281-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.484

94.715

0.365

Multiple sequence alignment