Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MPG20_RS06320 Genome accession   NZ_CP094171
Coordinates   1312738..1313781 (-) Length   347 a.a.
NCBI ID   WP_000952098.1    Uniprot ID   A0A0E0W9R3
Organism   Helicobacter pylori strain Hpfe0003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307738..1318781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG20_RS06290 (MPG20_06290) - 1307979..1309097 (+) 1119 WP_245073992.1 glycosyltransferase family 8 protein -
  MPG20_RS06295 (MPG20_06295) - 1309094..1310050 (-) 957 WP_000952296.1 PDC sensor domain-containing protein -
  MPG20_RS06300 (MPG20_06300) - 1310073..1310561 (-) 489 WP_001216273.1 shikimate kinase -
  MPG20_RS06305 (MPG20_06305) - 1310566..1311162 (-) 597 WP_245073994.1 AMIN domain-containing protein -
  MPG20_RS06310 (MPG20_06310) - 1311178..1311453 (-) 276 WP_000146214.1 hypothetical protein -
  MPG20_RS06315 (MPG20_06315) eno 1311446..1312726 (-) 1281 WP_245073996.1 phosphopyruvate hydratase -
  MPG20_RS06320 (MPG20_06320) recA 1312738..1313781 (-) 1044 WP_000952098.1 recombinase RecA Machinery gene
  MPG20_RS06325 (MPG20_06325) - 1313880..1314746 (+) 867 WP_245073997.1 menaquinone biosynthesis family protein -
  MPG20_RS06330 (MPG20_06330) - 1314743..1315510 (-) 768 WP_075656002.1 hypothetical protein -
  MPG20_RS06335 (MPG20_06335) - 1315598..1316197 (-) 600 WP_245073998.1 hypothetical protein -
  MPG20_RS06340 (MPG20_06340) - 1316209..1316793 (-) 585 WP_245073999.1 hypothetical protein -
  MPG20_RS06345 (MPG20_06345) - 1316894..1317100 (-) 207 WP_231175275.1 DUF4006 family protein -
  MPG20_RS06350 (MPG20_06350) ccoP 1317111..1317989 (-) 879 WP_245074000.1 cytochrome-c oxidase, cbb3-type subunit III -
  MPG20_RS06355 (MPG20_06355) - 1317991..1318209 (-) 219 WP_001868213.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37653.40 Da        Isoelectric Point: 5.7176

>NTDB_id=667952 MPG20_RS06320 WP_000952098.1 1312738..1313781(-) (recA) [Helicobacter pylori strain Hpfe0003]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=667952 MPG20_RS06320 WP_000952098.1 1312738..1313781(-) (recA) [Helicobacter pylori strain Hpfe0003]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCGCGTTTATTGATGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTACAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGAATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGAAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAAGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0W9R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.712

100

0.997
  recA Helicobacter pylori 26695

99.135

100

0.991
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.659

94.524

0.744
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

64.22

94.236

0.605
  recA Acinetobacter baylyi ADP1

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Glaesserella parasuis strain SC1401

60.366

94.524

0.571
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment