Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MPG31_RS06480 Genome accession   NZ_CP094074
Coordinates   1353829..1354872 (-) Length   347 a.a.
NCBI ID   WP_108364331.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1348829..1359872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS06450 (MPG31_06450) - 1349070..1350188 (+) 1119 WP_245015145.1 glycosyltransferase family 8 protein -
  MPG31_RS06455 (MPG31_06455) - 1350185..1351141 (-) 957 WP_050851426.1 PDC sensor domain-containing protein -
  MPG31_RS06460 (MPG31_06460) - 1351163..1351651 (-) 489 WP_001216273.1 shikimate kinase -
  MPG31_RS06465 (MPG31_06465) - 1351656..1352252 (-) 597 WP_245015723.1 AMIN domain-containing protein -
  MPG31_RS06470 (MPG31_06470) - 1352269..1352544 (-) 276 WP_140498733.1 hypothetical protein -
  MPG31_RS06475 (MPG31_06475) eno 1352537..1353817 (-) 1281 WP_245015146.1 phosphopyruvate hydratase -
  MPG31_RS06480 (MPG31_06480) recA 1353829..1354872 (-) 1044 WP_108364331.1 recombinase RecA Machinery gene
  MPG31_RS06485 (MPG31_06485) - 1354971..1355837 (+) 867 WP_245015147.1 menaquinone biosynthesis family protein -
  MPG31_RS06490 (MPG31_06490) - 1355834..1356601 (-) 768 WP_245015148.1 hypothetical protein -
  MPG31_RS06495 (MPG31_06495) - 1356689..1357270 (-) 582 WP_245015149.1 hypothetical protein -
  MPG31_RS06500 (MPG31_06500) - 1357283..1357867 (-) 585 WP_245015150.1 hypothetical protein -
  MPG31_RS06505 (MPG31_06505) - 1357968..1358174 (-) 207 WP_180478700.1 DUF4006 family protein -
  MPG31_RS06510 (MPG31_06510) ccoP 1358185..1359063 (-) 879 WP_245015151.1 cytochrome-c oxidase, cbb3-type subunit III -
  MPG31_RS06515 (MPG31_06515) - 1359065..1359283 (-) 219 WP_001868213.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37670.39 Da        Isoelectric Point: 5.5047

>NTDB_id=666466 MPG31_RS06480 WP_108364331.1 1353829..1354872(-) (recA) [Helicobacter pylori strain Hpfe103]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=666466 MPG31_RS06480 WP_108364331.1 1353829..1354872(-) (recA) [Helicobacter pylori strain Hpfe103]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCAGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACTGGTGTTTTGCACAAGATGAA
CACCACTTTAATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGCAACAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGGGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.712

100

0.997
  recA Helicobacter pylori 26695

99.712

100

0.997
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

79.268

94.524

0.749
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae MS11

66.769

93.66

0.625
  recA Neisseria gonorrhoeae strain FA1090

66.769

93.66

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.976

94.524

0.576
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53