Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSCI_RS16060 Genome accession   NZ_AP014637
Coordinates   3608633..3609700 (+) Length   355 a.a.
NCBI ID   WP_045488768.1    Uniprot ID   A0A077LH32
Organism   Pseudomonas sp. StFLB209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3603633..3614700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSCI_RS16045 (PSCI_3185) fdxA 3604695..3605018 (-) 324 WP_045488752.1 ferredoxin FdxA -
  PSCI_RS16050 (PSCI_3186) mutS 3605264..3607831 (-) 2568 WP_162484355.1 DNA mismatch repair protein MutS -
  PSCI_RS16055 (PSCI_3187) - 3608040..3608540 (+) 501 WP_045488758.1 CinA family protein -
  PSCI_RS16060 (PSCI_3188) recA 3608633..3609700 (+) 1068 WP_045488768.1 recombinase RecA Machinery gene
  PSCI_RS16065 (PSCI_3189) recX 3609709..3610173 (+) 465 WP_045488771.1 recombination regulator RecX -
  PSCI_RS16070 (PSCI_3190) - 3610179..3611294 (-) 1116 WP_045488774.1 TIGR00730 family Rossman fold protein -
  PSCI_RS16075 (PSCI_3191) - 3611639..3611854 (+) 216 WP_045488776.1 hypothetical protein -
  PSCI_RS16080 (PSCI_3192) - 3611911..3612339 (-) 429 WP_045488778.1 quorum-sensing-regulated virulence factor family protein -
  PSCI_RS16085 (PSCI_3193) - 3612537..3613247 (+) 711 WP_045488780.1 tRNA-uridine aminocarboxypropyltransferase -
  PSCI_RS16090 (PSCI_3194) erdR 3613447..3614094 (+) 648 WP_045488785.1 response regulator transcription factor ErdR -
  PSCI_RS16095 (PSCI_3195) - 3614170..3614538 (+) 369 WP_162484335.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37833.25 Da        Isoelectric Point: 5.1554

>NTDB_id=66447 PSCI_RS16060 WP_045488768.1 3608633..3609700(+) (recA) [Pseudomonas sp. StFLB209]
MDENKKKALAAALGQIERQFGKGAVMRMGDHERQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLAVAHGFLEKSGAWYSYQGNKIGQGKANSAKFLAENQEIAKALEK
QIRDKLLSGGAAAADNRTADIDESADDMAEADADI

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=66447 PSCI_RS16060 WP_045488768.1 3608633..3609700(+) (recA) [Pseudomonas sp. StFLB209]
ATGGACGAGAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAATTCGGCAAAGGTGCCGTAATGCG
CATGGGTGACCACGAGCGCCAGGCGATTCCTTCCATCTCTACCGGCTCGCTGGGTCTGGACATCGCGCTGGGCATTGGTG
GCCTGCCCAAAGGCCGGATCGTTGAAATCTATGGTCCGGAGTCTTCCGGTAAGACCACCTTGACCCTGTCGGTCATTGCC
CAGGCCCAGAAAATGGGCGCTACCTGCGCCTTCGTTGACGCCGAGCACGCGCTGGACCCCGAGTATGCTGGTAAATTGGG
TGTCAATGTCGACGACCTGCTGGTGTCGCAGCCCGATACTGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATTGTTGTCGACTCCGTGGCAGCACTGGTACCCAAGGCTGAAATCGAAGGCGAGATGGGTGAT
ATGCACGTGGGCCTCCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGTCT
GGTCATTTTCATCAACCAGATCCGGATGAAGATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCCC
TCAAGTTCTACGCTTCGGTCCGGCTCGACATCCGCCGTACCGGCGCTGTGAAAGAGGGGGATGAAGTGGTCGGTAGTGAG
ACCCGGGTCAAGATCGTCAAGAACAAGGTTGCGCCACCGTTCCGTCAGGCTGAGTTCCAGATCCTGTACGGAAAGGGCAT
TTACCTTAACGGCGAAATCATCGACCTGGCTGTGGCCCATGGCTTCCTGGAAAAATCCGGCGCCTGGTACAGCTACCAGG
GCAACAAGATTGGCCAGGGCAAGGCCAACTCGGCCAAGTTCCTTGCCGAGAATCAGGAAATTGCCAAGGCACTTGAAAAG
CAGATTCGAGACAAACTGCTCAGTGGTGGTGCCGCTGCTGCCGACAACCGCACAGCGGACATCGATGAGTCCGCTGACGA
TATGGCTGAAGCTGACGCCGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077LH32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.364

99.155

0.856
  recA Acinetobacter baylyi ADP1

73.199

97.746

0.715
  recA Acinetobacter baumannii D1279779

75.15

94.085

0.707
  recA Glaesserella parasuis strain SC1401

70.37

98.873

0.696
  recA Vibrio cholerae strain A1552

75

92.394

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

92.394

0.693
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae MS11

71.296

91.268

0.651
  recA Neisseria gonorrhoeae strain FA1090

71.296

91.268

0.651
  recA Ralstonia pseudosolanacearum GMI1000

73.633

87.606

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

92.113

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

94.085

0.589
  recA Helicobacter pylori 26695

62.08

92.113

0.572
  recA Helicobacter pylori strain NCTC11637

62.08

92.113

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Streptococcus pyogenes NZ131

55.271

98.873

0.546
  recA Streptococcus mitis SK321

56.725

96.338

0.546
  recA Streptococcus pneumoniae D39

59.509

91.831

0.546
  recA Streptococcus pneumoniae Rx1

59.509

91.831

0.546
  recA Streptococcus pneumoniae R6

59.509

91.831

0.546
  recA Streptococcus pneumoniae TIGR4

59.509

91.831

0.546
  recA Streptococcus mutans UA159

59.692

91.549

0.546
  recA Streptococcus mitis NCTC 12261

59.133

90.986

0.538
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

90.423

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.881

92.113

0.524
  recA Lactococcus lactis subsp. cremoris KW2

57.276

90.986

0.521

Multiple sequence alignment