Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MN187_RS01885 Genome accession   NZ_CP093384
Coordinates   375315..376373 (+) Length   352 a.a.
NCBI ID   WP_117972500.1    Uniprot ID   -
Organism   Vagococcus sp. CY52-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 370315..381373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN187_RS01860 (MN187_01860) - 370660..370953 (+) 294 WP_117972495.1 hypothetical protein -
  MN187_RS01865 (MN187_01865) - 371051..372259 (+) 1209 WP_117972496.1 NAD(P)/FAD-dependent oxidoreductase -
  MN187_RS01870 (MN187_01870) sdaAA 372312..373187 (-) 876 WP_117972497.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  MN187_RS01875 (MN187_01875) sdaAB 373201..373860 (-) 660 WP_117972498.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  MN187_RS01880 (MN187_01880) - 374004..375218 (+) 1215 WP_158559370.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MN187_RS01885 (MN187_01885) recA 375315..376373 (+) 1059 WP_117972500.1 recombinase RecA Machinery gene
  MN187_RS01890 (MN187_01890) rny 376623..378179 (+) 1557 WP_117972501.1 ribonuclease Y -
  MN187_RS01895 (MN187_01895) nrdD 378588..380750 (+) 2163 WP_370448230.1 anaerobic ribonucleoside-triphosphate reductase -
  MN187_RS01900 (MN187_01900) nrdG 380795..381373 (+) 579 WP_117972503.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38019.15 Da        Isoelectric Point: 4.7989

>NTDB_id=664212 MN187_RS01885 WP_117972500.1 375315..376373(+) (recA) [Vagococcus sp. CY52-2]
MADNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTVSSGSLALDSALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
SVQKAGGTAAFIDAEHALDPKYASALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMAADKDIVNKSGAWYSYQDERIGQGRENAKKYLAEHSEMMEEIYQ
KVRLAYNMDGVKPEEVEEENEKLEEMSVESED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=664212 MN187_RS01885 WP_117972500.1 375315..376373(+) (recA) [Vagococcus sp. CY52-2]
ATGGCAGATAATCGTAAAGCAGCCTTAGATGCTGCGTTAAAAAAAATAGAAAAAGATTTTGGTAAAGGTTCAGTAATGAA
ATTGGGAGAGAAAGTGGATACACAAATTTCAACAGTATCTAGTGGCTCTCTTGCTTTAGATTCTGCCTTAGGTGTTGGCG
GATACCCACGAGGAAGAATTGTGGAAGTTTACGGTCCAGAAAGTTCTGGTAAAACAACGGTTGCACTACACGCTATTGCT
TCAGTTCAAAAAGCTGGCGGGACGGCTGCCTTTATCGATGCAGAGCATGCATTAGATCCTAAATATGCAAGCGCGTTAGG
AGTTAATATTGATGAGCTATTGTTATCACAGCCGGATACTGGAGAACAGGGGTTAAATATTGCGGAAGCACTAGTTTCAA
GTGGAGCAATTGATATTGTTGTAGTCGATTCTGTTGCAGCACTTGTACCAAGAGCTGAAATTGATGGAGAAATGGGAGAT
TCACATGTTGGTCTGCAAGCTCGTTTAATGTCTCAGGCTTTAAGAAAATTATCAGGAACAATTAATAAAACCAAAACCAT
TGCTATCTTTATTAATCAAATCCGTGAAAAAGTTGGTGTGATGTTTGGAAATCCAGAAACAACACCAGGTGGGCGTGCAT
TGAAATTTTATGCAACAGTCCGTTTAGAAGTTCGTCGTGCAGAACAATTAAAATCAGGGACCGATATCATTGGTAACCGT
ACAAAAATTAAAGTCGTTAAAAATAAAGTGGCGCCACCTTTTAGAATAGCAGAAGTAGATATTATGTATGGTGAAGGAAT
TTCGCAAGAAGGCGAATTACTGGACATGGCTGCAGATAAAGACATCGTCAATAAAAGTGGTGCCTGGTATTCTTATCAAG
ATGAACGTATTGGTCAAGGCCGTGAAAATGCGAAAAAATATTTGGCTGAACACTCAGAGATGATGGAAGAGATTTATCAA
AAAGTACGTTTAGCTTATAATATGGATGGTGTAAAACCTGAAGAGGTAGAAGAAGAAAATGAAAAATTAGAGGAAATGTC
TGTCGAATCCGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.982

94.602

0.776
  recA Bacillus subtilis subsp. subtilis str. 168

79.448

92.614

0.736
  recA Streptococcus pneumoniae D39

71.304

98.011

0.699
  recA Streptococcus pneumoniae R6

71.304

98.011

0.699
  recA Streptococcus pneumoniae TIGR4

71.304

98.011

0.699
  recA Streptococcus pneumoniae Rx1

71.304

98.011

0.699
  recA Streptococcus mitis NCTC 12261

69.714

99.432

0.693
  recA Streptococcus mutans UA159

68.539

100

0.693
  recA Streptococcus pyogenes NZ131

72.121

93.75

0.676
  recA Streptococcus mitis SK321

72.256

93.182

0.673
  recA Lactococcus lactis subsp. cremoris KW2

71.037

93.182

0.662
  recA Ralstonia pseudosolanacearum GMI1000

60.563

100

0.611
  recA Neisseria gonorrhoeae MS11

61.318

99.148

0.608
  recA Neisseria gonorrhoeae MS11

61.318

99.148

0.608
  recA Neisseria gonorrhoeae strain FA1090

61.318

99.148

0.608
  recA Glaesserella parasuis strain SC1401

60.684

99.716

0.605
  recA Acinetobacter baumannii D1279779

60.632

98.864

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

93.182

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.308

92.33

0.594
  recA Acinetobacter baylyi ADP1

64.087

91.761

0.588
  recA Helicobacter pylori 26695

59.71

98.011

0.585
  recA Helicobacter pylori strain NCTC11637

59.71

98.011

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

97.443

0.585
  recA Pseudomonas stutzeri DSM 10701

61.61

91.761

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

91.761

0.565
  recA Vibrio cholerae strain A1552

61.61

91.761

0.565