Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MNR01_RS04445 Genome accession   NZ_CP093341
Coordinates   999538..1000578 (-) Length   346 a.a.
NCBI ID   WP_241919758.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 994538..1005578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS04430 (MNR01_04430) csrA 995714..995917 (-) 204 WP_241919755.1 carbon storage regulator CsrA -
  MNR01_RS04435 (MNR01_04435) alaS 996056..998704 (-) 2649 WP_241919756.1 alanine--tRNA ligase -
  MNR01_RS04440 (MNR01_04440) recX 998947..999510 (-) 564 WP_241919757.1 recombination regulator RecX -
  MNR01_RS04445 (MNR01_04445) recA 999538..1000578 (-) 1041 WP_241919758.1 recombinase RecA Machinery gene
  MNR01_RS04450 (MNR01_04450) lexA 1000789..1001457 (-) 669 WP_241919759.1 transcriptional repressor LexA -
  MNR01_RS04455 (MNR01_04455) - 1001522..1002022 (-) 501 WP_241919760.1 CinA family protein -
  MNR01_RS04460 (MNR01_04460) - 1002095..1004668 (-) 2574 WP_241919761.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37395.87 Da        Isoelectric Point: 4.9869

>NTDB_id=663817 MNR01_RS04445 WP_241919758.1 999538..1000578(-) (recA) [Lysobacter sp. S4-A87]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVAEPAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIA
ECQKLGGTAAFVDAEHALDPTYASKLGVNVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVDAKLVEKSGAWYSAYDERIGQGKENARQYLKDNPEIAKRL
EAALREKFVATDARRDEGSDDEVAEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=663817 MNR01_RS04445 WP_241919758.1 999538..1000578(-) (recA) [Lysobacter sp. S4-A87]
ATGGACGAGAACAAGAAGCGCGCCCTTTCGGCCGCCCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGCGGAGCCGGCCGAGGTCATCGGCACCGGTTCGCTGATGCTCGACATCGCGCTCGGCATTGGCG
GCCTGCCCAAGGGTCGCGTTGTCGAGATCTACGGTCCTGAGTCCTCGGGCAAGACCACGCTGACCCTGCAGACCATCGCC
GAGTGCCAGAAGCTGGGCGGCACCGCGGCCTTCGTCGACGCCGAGCACGCGCTCGACCCGACCTACGCCTCCAAGCTCGG
CGTCAACGTCGACGACCTGCTGGTCAGCCAGCCCGACACCGGCGAGCAGGCCCTGGAAATCGCCGACATGCTGGTGCGCT
CGGGCGCGGTCGACATGGTCGTGGTCGACTCGGTCGCCGCGCTGACCCCGCGCGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACTGCAT
GGTCATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGCTGGCACCGCCGTTCAAGCAGGTCGTCACCGAGATCCTGTACGGCGA
GGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGGACGCCAAGCTGGTCGAGAAGTCCGGTGCCTGGTACAGCG
CCTACGACGAGCGCATCGGCCAGGGCAAGGAAAATGCCCGCCAGTACCTCAAGGACAACCCCGAGATCGCCAAGCGCCTG
GAAGCGGCGCTGCGCGAGAAGTTCGTGGCGACCGATGCCCGTCGTGACGAAGGCAGCGACGACGAAGTCGCCGAAGAGTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.874

96.243

0.711
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.556

95.087

0.699
  recA Vibrio cholerae strain A1552

73.556

95.087

0.699
  recA Acinetobacter baylyi ADP1

69.653

100

0.697
  recA Ralstonia pseudosolanacearum GMI1000

74.684

91.329

0.682
  recA Acinetobacter baumannii D1279779

70.695

95.665

0.676
  recA Glaesserella parasuis strain SC1401

64.689

100

0.662
  recA Neisseria gonorrhoeae MS11

66.472

99.133

0.659
  recA Neisseria gonorrhoeae MS11

66.472

99.133

0.659
  recA Neisseria gonorrhoeae strain FA1090

66.472

99.133

0.659
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.582

96.821

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.231

93.931

0.613
  recA Streptococcus mitis NCTC 12261

58.357

100

0.595
  recA Streptococcus mitis SK321

58.96

100

0.59
  recA Helicobacter pylori strain NCTC11637

62.195

94.798

0.59
  recA Streptococcus pneumoniae Rx1

59.357

98.844

0.587
  recA Streptococcus pneumoniae TIGR4

59.357

98.844

0.587
  recA Streptococcus pneumoniae R6

59.357

98.844

0.587
  recA Streptococcus pneumoniae D39

59.357

98.844

0.587
  recA Helicobacter pylori 26695

61.89

94.798

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

93.931

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

60.909

95.376

0.581
  recA Streptococcus mutans UA159

60

95.376

0.572
  recA Streptococcus pyogenes NZ131

59.394

95.376

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

94.798

0.561
  recA Lactococcus lactis subsp. cremoris KW2

58.154

93.931

0.546