Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MNQ96_RS14330 Genome accession   NZ_CP093335
Coordinates   3075591..3076670 (-) Length   359 a.a.
NCBI ID   WP_241941254.1    Uniprot ID   -
Organism   Sphingopyxis granuli strain A2-E30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3070591..3081670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ96_RS14305 (MNQ96_14305) - 3070913..3071290 (+) 378 WP_241941250.1 Zn-ribbon domain-containing OB-fold protein -
  MNQ96_RS14310 (MNQ96_14310) - 3071290..3072441 (+) 1152 WP_241941251.1 thiolase family protein -
  MNQ96_RS14315 (MNQ96_14315) - 3072492..3073235 (+) 744 WP_276516784.1 Asp/Glu racemase -
  MNQ96_RS14320 (MNQ96_14320) - 3073291..3074481 (+) 1191 WP_241941252.1 PhoPQ-activated protein PqaA family protein -
  MNQ96_RS14325 (MNQ96_14325) - 3074651..3075349 (+) 699 WP_241941253.1 TetR/AcrR family transcriptional regulator -
  MNQ96_RS14330 (MNQ96_14330) recA 3075591..3076670 (-) 1080 WP_241941254.1 recombinase RecA Machinery gene
  MNQ96_RS14335 (MNQ96_14335) - 3076786..3077136 (-) 351 WP_241941255.1 response regulator -
  MNQ96_RS14340 (MNQ96_14340) - 3077129..3079537 (-) 2409 WP_420854289.1 response regulator -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38494.99 Da        Isoelectric Point: 4.9551

>NTDB_id=663757 MNQ96_RS14330 WP_241941254.1 3075591..3076670(-) (recA) [Sphingopyxis granuli strain A2-E30]
MAGQLSLVESGKSVNGPDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCLAEAQKMGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKN
FLSENPELMQRLESAIRGRTDAVAEEMMTGPDDGDDDDL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=663757 MNQ96_RS14330 WP_241941254.1 3075591..3076670(-) (recA) [Sphingopyxis granuli strain A2-E30]
ATGGCCGGACAATTGTCACTCGTCGAATCGGGGAAATCAGTGAACGGACCAGACAGGCAGAAGGCGCTCGACGCCGCATT
GGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCGGTGATGAAGCTCGGCTCGAAGGAGGCGATGCAGGTCGAGGCGATCT
CGACTGGTTCGCTCGGGCTTGATATCGCGCTGGGGGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTATGGCCCC
GAAAGTTCGGGCAAGACTACGCTCGCGCTGCATTGCCTCGCTGAGGCGCAGAAGATGGGCGGCACCGCGGCCTTCGTCGA
CGCCGAACATGCGCTCGATCCCGTTTATGCGAAGAAGCTTGGCGTCGACATCGACGAACTGATCGTGTCGCAGCCCGACA
CCGGCGAGCAGGCACTCGAGATCGTCGACACGCTGGTACGTTCGAACGCGATCGACGTGCTTGTCGTCGATTCGGTCGCG
GCGCTCGTTCCGCGCGCGGAGATCGAGGGAGAGATGGGCGACAGTCATGTCGGCCTGCAGGCACGGCTGATGTCGCAGAG
CCTGCGCAAGCTCACCGGGTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGGAATCCCGAGACGACGACCGGCGGCAACGCGCTCAAATTCTATGCCTCGGTCCGCCTCGACATTCGCCGC
ACCGGGCAGATCAAGGACCGCGACGAGATCGTCGGCAACACGACGCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAGTTCGACATCATGTACGGCCAGGGTATTTCGAAGATCGGCGAAATCCTCGACCTCGGTGTCAAGG
CCGGGCTGGTCGAGAAATCGGGCGCCTGGTTCAGCTATGATTCGATCCGAATCGGGCAGGGCCGCGAGAATGCGAAGAAC
TTCCTGAGCGAGAATCCCGAGCTGATGCAGCGGCTCGAAAGCGCGATCCGCGGCCGCACCGATGCGGTGGCGGAAGAGAT
GATGACCGGCCCCGACGACGGGGATGACGACGATCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

67.857

93.593

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.857

93.593

0.635
  recA Pseudomonas stutzeri DSM 10701

70.497

89.694

0.632
  recA Glaesserella parasuis strain SC1401

64.857

97.493

0.632
  recA Neisseria gonorrhoeae MS11

69.159

89.415

0.618
  recA Neisseria gonorrhoeae MS11

69.159

89.415

0.618
  recA Neisseria gonorrhoeae strain FA1090

69.159

89.415

0.618
  recA Acinetobacter baylyi ADP1

64.118

94.708

0.607
  recA Ralstonia pseudosolanacearum GMI1000

70.779

85.794

0.607
  recA Acinetobacter baumannii D1279779

67.812

89.136

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.257

92.201

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

89.136

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.501

93.872

0.596
  recA Helicobacter pylori strain NCTC11637

62.611

93.872

0.588
  recA Helicobacter pylori 26695

62.315

93.872

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

61.947

94.429

0.585
  recA Streptococcus pyogenes NZ131

59.824

94.986

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.059

94.15

0.565
  recA Streptococcus pneumoniae R6

61.585

91.365

0.563
  recA Streptococcus pneumoniae TIGR4

61.585

91.365

0.563
  recA Streptococcus pneumoniae Rx1

61.585

91.365

0.563
  recA Streptococcus pneumoniae D39

61.585

91.365

0.563
  recA Streptococcus mitis SK321

61.656

90.808

0.56
  recA Streptococcus mitis NCTC 12261

61.656

90.808

0.56
  recA Streptococcus mutans UA159

58.651

94.986

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.202

90.808

0.538