Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MN210_RS10795 Genome accession   NZ_CP093310
Coordinates   2581616..2582665 (+) Length   349 a.a.
NCBI ID   WP_011961195.1    Uniprot ID   A0AAT9PC61
Organism   Psychrobacter raelei strain PraFG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2576616..2587665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN210_RS10785 (MN210_13670) lon 2577718..2580297 (+) 2580 WP_338412199.1 endopeptidase La -
  MN210_RS10790 (MN210_13675) - 2580543..2581094 (+) 552 WP_011961194.1 superoxide dismutase family protein -
  MN210_RS10795 (MN210_13680) recA 2581616..2582665 (+) 1050 WP_011961195.1 recombinase RecA Machinery gene
  MN210_RS10800 (MN210_19245) - 2582812..2584047 (+) 1236 WP_338412200.1 regulatory protein RecX -
  MN210_RS10805 (MN210_13700) - 2584088..2584687 (-) 600 WP_241878550.1 GNAT family N-acetyltransferase -
  MN210_RS10810 (MN210_19250) - 2584821..2585990 (+) 1170 WP_338412201.1 tRNA pseudouridine(13) synthase TruD -
  MN210_RS10815 (MN210_13715) - 2586014..2586943 (-) 930 WP_011961199.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37371.69 Da        Isoelectric Point: 4.6944

>NTDB_id=663453 MN210_RS10795 WP_011961195.1 2581616..2582665(+) (recA) [Psychrobacter raelei strain PraFG1]
MDDNKAKALKAALGQIEKQFGKNTIMHLGDNSATLDVDVVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLQAI
AECQKQGGTCAFIDAEHALDPIYARKLGVNTDDLLVSQPDNGEQALEITDMLVRSGALDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKSGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGVVGKAGAWYSYGDEKIGQGKANSVLFLKDNPAIAEEIE
AKIRAEKLAVEPEKGAEAVDEVEPESEVE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=663453 MN210_RS10795 WP_011961195.1 2581616..2582665(+) (recA) [Psychrobacter raelei strain PraFG1]
ATGGATGACAATAAAGCCAAAGCGTTAAAAGCAGCCTTAGGCCAAATCGAAAAACAATTTGGTAAAAACACCATCATGCA
TTTGGGCGATAACTCAGCCACGCTGGATGTGGACGTGGTCTCTACCGGCTCACTTGGCTTAGATATTGCTTTAGGTATTG
GCGGTTTGCCAAAAGGTCGTATTATTGAGATTTATGGCCCAGAAAGCTCAGGTAAAACCACATTGACCTTGCAAGCCATT
GCTGAGTGTCAAAAACAAGGCGGTACTTGTGCCTTTATCGATGCCGAACACGCTTTAGATCCCATCTATGCCCGTAAACT
TGGGGTAAATACTGATGACTTATTGGTGTCTCAGCCTGATAATGGTGAGCAAGCGCTTGAGATTACCGACATGCTGGTGC
GTTCAGGCGCATTAGACATGATTGTTATTGACTCGGTCGCTGCCCTTACCCCGCGTGCGGAGATTGAAGGTGAGATGGGT
GACAGCCACATGGGCTTGCAGGCGCGTCTAATGAGTCAGGCGCTACGTAAAATCACCGGTAACGCCAAACGCTCAAACTG
TATGGTTATCTTTATTAACCAAATTCGTATGAAAATTGGGGTTATGTTCGGTTCGCCTGAAACCACAACCGGTGGTAATG
CCCTTAAATTCTACGCCTCAGTACGTCTAGATATTCGCCGTATTGGCGCGGTGAAAAGCGGTGATGAAATCATTGGTAAC
CAAACCCGTGTTAAAGTTATTAAAAACAAAATGGCGCCACCATTTCGTCAAGCTGAGTTTGAGATTACTTATGGTGAAGG
CACCAACCACTTGGCTGAAGTGATCGACTTAGGGGTTGAGATTGGCGTGGTCGGTAAGGCCGGTGCATGGTACAGCTATG
GCGATGAAAAAATTGGGCAAGGTAAAGCCAACTCAGTGTTGTTCTTAAAAGACAATCCCGCCATTGCTGAAGAGATTGAA
GCCAAAATCCGTGCCGAAAAGCTGGCGGTAGAGCCAGAAAAAGGGGCTGAAGCTGTAGATGAGGTTGAGCCTGAATCTGA
AGTCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

77.011

99.713

0.768
  recA Acinetobacter baumannii D1279779

76.812

98.854

0.759
  recA Pseudomonas stutzeri DSM 10701

72.434

97.708

0.708
  recA Vibrio cholerae strain A1552

69.341

100

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.341

100

0.693
  recA Glaesserella parasuis strain SC1401

68.678

99.713

0.685
  recA Ralstonia pseudosolanacearum GMI1000

71.037

93.983

0.668
  recA Neisseria gonorrhoeae strain FA1090

69.538

93.123

0.648
  recA Neisseria gonorrhoeae MS11

69.538

93.123

0.648
  recA Neisseria gonorrhoeae MS11

69.538

93.123

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.692

93.123

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.554

95.129

0.605
  recA Helicobacter pylori strain NCTC11637

64.308

93.123

0.599
  recA Helicobacter pylori 26695

64

93.123

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.58

92.837

0.59
  recA Streptococcus mitis SK321

58.017

98.281

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.491

92.264

0.567
  recA Streptococcus mitis NCTC 12261

58.284

96.848

0.564
  recA Streptococcus mutans UA159

56.16

100

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

92.55

0.556
  recA Streptococcus pyogenes NZ131

58.896

93.41

0.55
  recA Streptococcus pneumoniae Rx1

58.896

93.41

0.55
  recA Streptococcus pneumoniae D39

58.896

93.41

0.55
  recA Streptococcus pneumoniae R6

58.896

93.41

0.55
  recA Streptococcus pneumoniae TIGR4

58.896

93.41

0.55
  recA Lactococcus lactis subsp. cremoris KW2

59.077

93.123

0.55