Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PST29_RS06395 | Genome accession | NZ_AP014628 |
| Coordinates | 1423065..1424117 (+) | Length | 350 a.a. |
| NCBI ID | WP_011059579.1 | Uniprot ID | A0A2C9EHI1 |
| Organism | Pseudomonas sp. St29 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1365212..1424117 | 1423065..1424117 | within | 0 |
Gene organization within MGE regions
Location: 1365212..1424117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PST29_RS06095 (PST29_1221) | - | 1365212..1366111 (-) | 900 | WP_060837774.1 | LysR substrate-binding domain-containing protein | - |
| PST29_RS06100 (PST29_1222) | - | 1366216..1367328 (+) | 1113 | WP_060837775.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| PST29_RS06105 (PST29_1223) | fghA | 1367416..1368261 (+) | 846 | WP_060842606.1 | S-formylglutathione hydrolase | - |
| PST29_RS06110 (PST29_1224) | ispF | 1368314..1368787 (+) | 474 | WP_060837777.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| PST29_RS06115 (PST29_1225) | truD | 1368784..1369842 (+) | 1059 | WP_060842607.1 | tRNA pseudouridine(13) synthase TruD | - |
| PST29_RS06120 (PST29_1226) | surE | 1369830..1370579 (+) | 750 | WP_047302063.1 | 5'/3'-nucleotidase SurE | - |
| PST29_RS06125 (PST29_1227) | - | 1370621..1371256 (+) | 636 | WP_173655928.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| PST29_RS30730 (PST29_1228) | - | 1371468..1372340 (+) | 873 | WP_082729181.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| PST29_RS06130 (PST29_1229) | rpoS | 1372447..1373454 (+) | 1008 | WP_016964675.1 | RNA polymerase sigma factor RpoS | - |
| PST29_RS06135 (PST29_1230) | fdxA | 1373972..1374295 (-) | 324 | WP_016964674.1 | ferredoxin FdxA | - |
| PST29_RS06140 (PST29_1231) | mutS | 1374438..1377017 (-) | 2580 | WP_060842608.1 | DNA mismatch repair protein MutS | - |
| PST29_RS06145 (PST29_1232) | - | 1377204..1377950 (+) | 747 | WP_060837780.1 | XRE family transcriptional regulator | - |
| PST29_RS06150 (PST29_1233) | - | 1378469..1378819 (+) | 351 | WP_016967167.1 | phage holin family protein | - |
| PST29_RS06155 (PST29_1234) | - | 1378900..1379421 (+) | 522 | WP_060842609.1 | hypothetical protein | - |
| PST29_RS06160 (PST29_1235) | - | 1379418..1380008 (+) | 591 | WP_060842610.1 | phage baseplate assembly protein V | - |
| PST29_RS06165 (PST29_1236) | - | 1380089..1380292 (+) | 204 | WP_060837783.1 | hypothetical protein | - |
| PST29_RS06170 (PST29_1237) | - | 1380297..1380623 (+) | 327 | WP_060842611.1 | GPW/gp25 family protein | - |
| PST29_RS06175 (PST29_1238) | - | 1380620..1381501 (+) | 882 | WP_060842612.1 | baseplate J/gp47 family protein | - |
| PST29_RS06180 (PST29_1239) | - | 1381503..1382108 (+) | 606 | WP_060842613.1 | phage tail protein I | - |
| PST29_RS31560 (PST29_1240) | - | 1382105..1384525 (+) | 2421 | WP_148659596.1 | phage tail protein | - |
| PST29_RS30735 (PST29_1241) | - | 1384536..1384961 (+) | 426 | WP_232513205.1 | phage tail assembly chaperone | - |
| PST29_RS06195 (PST29_1242) | - | 1385064..1386230 (+) | 1167 | WP_060842615.1 | phage tail sheath family protein | - |
| PST29_RS06200 (PST29_1243) | - | 1386243..1386752 (+) | 510 | WP_016965333.1 | phage major tail tube protein | - |
| PST29_RS06205 (PST29_1244) | - | 1386765..1387070 (+) | 306 | WP_060842616.1 | phage tail assembly protein | - |
| PST29_RS06210 (PST29_1245) | - | 1387212..1389767 (+) | 2556 | WP_060842617.1 | phage tail tape measure protein | - |
| PST29_RS06215 (PST29_1246) | - | 1389777..1390622 (+) | 846 | WP_060842618.1 | phage tail protein | - |
| PST29_RS06220 (PST29_1247) | - | 1390597..1390803 (+) | 207 | WP_060842619.1 | tail protein X | - |
| PST29_RS06225 (PST29_1248) | - | 1390865..1391920 (+) | 1056 | WP_060842620.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| PST29_RS06230 (PST29_1249) | - | 1392025..1393176 (+) | 1152 | WP_060842621.1 | glycosyl hydrolase family 18 protein | - |
| PST29_RS06235 (PST29_1250) | - | 1393243..1393434 (+) | 192 | WP_019093183.1 | hypothetical protein | - |
| PST29_RS06240 (PST29_1251) | - | 1393525..1394016 (+) | 492 | WP_016964892.1 | phage tail tube protein | - |
| PST29_RS06245 (PST29_1252) | - | 1394025..1394375 (+) | 351 | WP_016964891.1 | phage tail assembly chaperone family protein, TAC | - |
| PST29_RS06250 (PST29_1253) | - | 1394405..1394659 (+) | 255 | WP_060845073.1 | hypothetical protein | - |
| PST29_RS06255 (PST29_1254) | - | 1394719..1396128 (+) | 1410 | WP_060842622.1 | phage tail tape measure protein | - |
| PST29_RS06260 (PST29_1255) | - | 1396168..1396506 (+) | 339 | WP_060842623.1 | phage tail protein | - |
| PST29_RS32310 (PST29_1256) | - | 1396503..1397747 (+) | 1245 | WP_177342978.1 | hypothetical protein | - |
| PST29_RS30745 (PST29_1257) | - | 1397748..1398044 (+) | 297 | WP_082729182.1 | hypothetical protein | - |
| PST29_RS06265 (PST29_1258) | - | 1398044..1398307 (+) | 264 | WP_060842624.1 | hypothetical protein | - |
| PST29_RS06270 (PST29_1259) | - | 1398356..1399039 (+) | 684 | WP_019093175.1 | phage minor tail protein L | - |
| PST29_RS06275 (PST29_1260) | - | 1399042..1399818 (+) | 777 | WP_060842625.1 | Mov34/MPN/PAD-1 family protein | - |
| PST29_RS06280 (PST29_1261) | - | 1399874..1400506 (+) | 633 | WP_060842626.1 | tail assembly protein | - |
| PST29_RS06285 (PST29_1262) | - | 1400573..1401181 (+) | 609 | WP_060842627.1 | tail assembly protein | - |
| PST29_RS06290 (PST29_1263) | - | 1401242..1404334 (+) | 3093 | WP_060842628.1 | host specificity protein J | - |
| PST29_RS31565 (PST29_1264) | - | 1404343..1404624 (+) | 282 | WP_148659597.1 | hypothetical protein | - |
| PST29_RS31570 (PST29_1265) | - | 1404621..1405340 (+) | 720 | WP_148659598.1 | hypothetical protein | - |
| PST29_RS06295 (PST29_1266) | - | 1405760..1406344 (+) | 585 | WP_060842629.1 | hypothetical protein | - |
| PST29_RS06300 (PST29_1267) | - | 1406341..1406523 (+) | 183 | WP_047302105.1 | DUF2635 domain-containing protein | - |
| PST29_RS06305 (PST29_1268) | - | 1406523..1408019 (+) | 1497 | WP_060842630.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| PST29_RS06310 (PST29_1269) | - | 1408086..1408433 (+) | 348 | WP_016965085.1 | phage tail tube protein | - |
| PST29_RS06315 (PST29_1270) | - | 1408430..1408726 (+) | 297 | WP_060842631.1 | phage tail assembly protein | - |
| PST29_RS06320 (PST29_1271) | - | 1408857..1410578 (+) | 1722 | WP_060842632.1 | phage tail protein | - |
| PST29_RS06325 (PST29_1272) | - | 1410568..1411812 (+) | 1245 | WP_060842633.1 | DNA circularization N-terminal domain-containing protein | - |
| PST29_RS06330 (PST29_1273) | - | 1411816..1412856 (+) | 1041 | WP_060842634.1 | baseplate protein | - |
| PST29_RS06335 (PST29_1274) | - | 1412965..1413471 (+) | 507 | WP_060837800.1 | phage baseplate assembly protein | - |
| PST29_RS06340 (PST29_1275) | - | 1413474..1413872 (+) | 399 | WP_060837801.1 | phage GP46 family protein | - |
| PST29_RS06345 (PST29_1276) | - | 1413862..1414902 (+) | 1041 | WP_060842635.1 | baseplate J/gp47 family protein | - |
| PST29_RS06350 (PST29_1277) | - | 1414890..1415489 (+) | 600 | WP_060842636.1 | putative phage tail protein | - |
| PST29_RS06355 (PST29_1278) | - | 1415505..1417292 (+) | 1788 | WP_060842637.1 | phage tail protein | - |
| PST29_RS30750 (PST29_1279) | - | 1417289..1417651 (+) | 363 | WP_082729183.1 | tail fiber assembly protein | - |
| PST29_RS06360 (PST29_1280) | - | 1417750..1418979 (+) | 1230 | WP_232513206.1 | phage tail protein | - |
| PST29_RS30755 (PST29_1281) | - | 1418992..1419420 (+) | 429 | WP_082729184.1 | tail fiber assembly protein | - |
| PST29_RS06365 (PST29_1282) | - | 1419471..1420034 (+) | 564 | WP_016966077.1 | glycoside hydrolase family 19 protein | - |
| PST29_RS06370 (PST29_1283) | - | 1420191..1420697 (+) | 507 | WP_060842638.1 | hypothetical protein | - |
| PST29_RS30760 | - | 1420768..1420953 (+) | 186 | WP_082729320.1 | Com family DNA-binding transcriptional regulator | - |
| PST29_RS06375 (PST29_1284) | - | 1420962..1421804 (+) | 843 | WP_060837808.1 | putidacin L1 family lectin-like bacteriocin | - |
| PST29_RS06385 (PST29_1285) | - | 1421982..1422314 (+) | 333 | WP_020372545.1 | hypothetical protein | - |
| PST29_RS06390 (PST29_1286) | - | 1422481..1422981 (+) | 501 | WP_060842639.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| PST29_RS06395 (PST29_1287) | recA | 1423065..1424117 (+) | 1053 | WP_011059579.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37462.95 Da Isoelectric Point: 5.5108
>NTDB_id=66327 PST29_RS06395 WP_011059579.1 1423065..1424117(+) (recA) [Pseudomonas sp. St29]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=66327 PST29_RS06395 WP_011059579.1 1423065..1424117(+) (recA) [Pseudomonas sp. St29]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCATGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATCGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCGTCCGGTAAGACCACCCTGACCCTGTCGGTCATCGCT
CAGGCGCAGAAAGCCGGTGCCACTTGTGCCTTCGTCGATGCCGAGCACGCGCTGGACCCGGAATACGCCGGCAAGCTGGG
GGTCAATGTCGACGATCTGCTGGTTTCTCAGCCGGATACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCTCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGATGAGGTGGTCGGTAGCGAA
ACCCGAGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTCAACGGCGAGATCATCGATCTTGGCGTGCTGCACGGTTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGTTGGAGAAG
CAGATTCGCGAGAAGCTGCTGACAGCCTCGCCAGACGTCAAAGCCAATCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCATGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATCGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCGTCCGGTAAGACCACCCTGACCCTGTCGGTCATCGCT
CAGGCGCAGAAAGCCGGTGCCACTTGTGCCTTCGTCGATGCCGAGCACGCGCTGGACCCGGAATACGCCGGCAAGCTGGG
GGTCAATGTCGACGATCTGCTGGTTTCTCAGCCGGATACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCTCTGGTGCCCAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGTCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACCGGCGCGGTGAAGGAAGGCGATGAGGTGGTCGGTAGCGAA
ACCCGAGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTCAACGGCGAGATCATCGATCTTGGCGTGCTGCACGGTTTCCTGGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGTTGGAGAAG
CAGATTCGCGAGAAGCTGCTGACAGCCTCGCCAGACGTCAAAGCCAATCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.