Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MM221_RS00035 Genome accession   NZ_CP093299
Coordinates   7783..8835 (-) Length   350 a.a.
NCBI ID   WP_255236241.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2783..13835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS00020 (MM221_00020) - 4061..4321 (-) 261 WP_255236238.1 stage V sporulation protein S -
  MM221_RS00025 (MM221_00025) - 4590..5384 (-) 795 WP_255236239.1 TIGR00282 family metallophosphoesterase -
  MM221_RS00030 (MM221_00030) rny 5557..7122 (-) 1566 WP_255236240.1 ribonuclease Y -
  MM221_RS00035 (MM221_00035) recA 7783..8835 (-) 1053 WP_255236241.1 recombinase RecA Machinery gene
  MM221_RS00040 (MM221_00040) - 9069..10652 (-) 1584 WP_255236242.1 DEAD/DEAH box helicase -
  MM221_RS00045 (MM221_00045) cinA 10673..11905 (-) 1233 WP_255236243.1 competence/damage-inducible protein A Machinery gene
  MM221_RS00050 (MM221_00050) pgsA 11929..12507 (-) 579 WP_255236244.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM221_RS00055 (MM221_00055) - 12732..13601 (-) 870 WP_255238298.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37934.03 Da        Isoelectric Point: 5.0833

>NTDB_id=663224 MM221_RS00035 WP_255236241.1 7783..8835(-) (recA) [Salipaludibacillus sp. LMS25]
MSDRKQALDMALKQIEKQFGKGSIMKLGEQAERRVSTISSGALALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVSKSNTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGNKT
KLKVVKNKVAPPFRTAEVDIMYGEGISREGSILDIASDLDIVQKSGAWYSYNNDRMGQGRENAKQFLKENEEVTKEIENR
IREYHGLLGTQEVPTENSGDEGEGLPLDVK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=663224 MM221_RS00035 WP_255236241.1 7783..8835(-) (recA) [Salipaludibacillus sp. LMS25]
ATGTCAGATCGAAAACAAGCGTTAGATATGGCTTTAAAACAGATTGAGAAACAATTCGGTAAAGGTTCTATTATGAAATT
AGGTGAGCAAGCAGAGCGTCGTGTGTCGACGATCTCTAGTGGGGCCTTAGCACTTGATATTGCCTTAGGAGTAGGCGGAT
ATCCACGGGGAAGAGTGATTGAGATTTATGGGCCTGAATCATCTGGTAAGACAACTGTTGCTCTTCATGCGATTGCTGAA
GTTCAACGCAATGGTGGTCAAGCAGCTTTTATAGATGCTGAGCATGCTTTAGACCCTGTTTATGCACAAAATTTAGGTGT
TAATATTGATGAATTACTATTATCTCAACCAGATACAGGAGAGCAAGCTTTAGAAATTGCTGAAGCGCTTGTACGAAGTG
GAGCTGTAGATATTCTTATCATTGACTCTGTGGCTGCTCTCGTTCCAAAAGCGGAAATAGAAGGAGAGATGGGAGATAGC
CATGTAGGTTTGCAAGCTCGATTAATGTCTCAAGCACTTCGGAAGCTATCAGGAGCTGTTAGTAAATCCAATACAATTGC
CGTTTTCATCAACCAAATTCGTGAAAAGGTGGGGGTCATGTTTGGTAACCCAGAGACAACTCCTGGTGGACGTGCGCTTA
AATTCTATTCCTCTGTTCGGTTAGAAGTCCGTCGGGCAGAGACATTGAAACAAGGAAACGATATGATAGGAAATAAAACA
AAATTAAAAGTCGTTAAAAATAAAGTAGCTCCTCCATTTAGAACAGCGGAAGTTGATATTATGTATGGCGAAGGGATTTC
ACGTGAAGGATCTATTTTGGATATTGCGTCAGATTTAGACATTGTACAAAAAAGCGGAGCATGGTACTCATACAATAACG
ATCGTATGGGACAAGGACGAGAAAATGCTAAGCAATTCCTTAAGGAAAATGAGGAAGTAACGAAAGAAATAGAGAATCGC
ATCCGTGAATACCATGGATTGCTTGGAACACAAGAAGTACCTACAGAAAATTCTGGTGATGAAGGGGAAGGCCTTCCTTT
AGATGTTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.792

93.429

0.783
  recA Latilactobacillus sakei subsp. sakei 23K

72.239

95.714

0.691
  recA Streptococcus pneumoniae D39

65.193

100

0.674
  recA Streptococcus pneumoniae R6

65.193

100

0.674
  recA Streptococcus pneumoniae Rx1

65.193

100

0.674
  recA Streptococcus pneumoniae TIGR4

65.193

100

0.674
  recA Streptococcus mitis SK321

66.86

98.286

0.657
  recA Streptococcus mitis NCTC 12261

66.57

98.286

0.654
  recA Streptococcus mutans UA159

66.377

98.571

0.654
  recA Streptococcus pyogenes NZ131

68.293

93.714

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.369

96

0.637
  recA Neisseria gonorrhoeae strain FA1090

63.848

98

0.626
  recA Neisseria gonorrhoeae MS11

63.848

98

0.626
  recA Neisseria gonorrhoeae MS11

63.848

98

0.626
  recA Ralstonia pseudosolanacearum GMI1000

63.205

96.286

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

97.143

0.6
  recA Glaesserella parasuis strain SC1401

65.204

91.143

0.594
  recA Vibrio cholerae strain A1552

64.174

91.714

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

91.714

0.589
  recA Acinetobacter baylyi ADP1

62.654

92.571

0.58
  recA Helicobacter pylori 26695

62.154

92.857

0.577
  recA Helicobacter pylori strain NCTC11637

62.154

92.857

0.577
  recA Pseudomonas stutzeri DSM 10701

62.813

91.429

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

93.429

0.574
  recA Acinetobacter baumannii D1279779

61.28

93.714

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.429

0.551