Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MNY58_RS08165 Genome accession   NZ_CP093217
Coordinates   1684544..1685593 (-) Length   349 a.a.
NCBI ID   WP_099090937.1    Uniprot ID   A0A2C6WMK5
Organism   Staphylococcus edaphicus strain CCM 8731     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679544..1690593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNY58_RS08150 (MNY58_08150) - 1680991..1681779 (-) 789 WP_099090934.1 TIGR00282 family metallophosphoesterase -
  MNY58_RS08155 (MNY58_08155) - 1681944..1682159 (+) 216 WP_099090935.1 hypothetical protein -
  MNY58_RS08160 (MNY58_08160) rny 1682590..1684149 (-) 1560 WP_099090936.1 ribonuclease Y -
  MNY58_RS08165 (MNY58_08165) recA 1684544..1685593 (-) 1050 WP_099090937.1 recombinase RecA Machinery gene
  MNY58_RS08170 (MNY58_08170) - 1685769..1686911 (-) 1143 WP_099090938.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MNY58_RS08175 (MNY58_08175) pgsA 1687425..1688006 (-) 582 WP_099090939.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MNY58_RS08180 (MNY58_08180) - 1688057..1688449 (-) 393 WP_099090940.1 helix-turn-helix domain-containing protein -
  MNY58_RS08185 (MNY58_08185) - 1688482..1689312 (-) 831 WP_099090941.1 DUF3388 domain-containing protein -
  MNY58_RS08190 (MNY58_08190) - 1689516..1690220 (-) 705 WP_099090942.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37852.00 Da        Isoelectric Point: 5.7688

>NTDB_id=662619 MNY58_RS08165 WP_099090937.1 1684544..1685593(-) (recA) [Staphylococcus edaphicus strain CCM 8731]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGAEHEIVDKSGAWYSYNGERMGQGKENVKLYLKENPAIREEIDH
KLREKLGIFDGDVDDKEAEKPATLFDEEK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=662619 MNY58_RS08165 WP_099090937.1 1684544..1685593(-) (recA) [Staphylococcus edaphicus strain CCM 8731]
TTGGATAACGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGTGCAGTTATGAA
ATTAGGCGACAATAAGGCGCGTAAAGTTTCAAGTGTATCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGTGTAGGGG
GTTACCCTAAAGGAAGAATAGTAGAAATTTATGGTCCAGAAAGTTCGGGTAAAACAACAGTAGCATTACACGCAATTGCC
GAAGTGCAGAAGAATGGCGGTGTGGCAGCATTTATAGATGCTGAGCATGCGTTAGACCCTGTTTATGCTGAAGCATTAGG
TGTAGATATACAAAATTTATATTTATCTCAACCTGACCATGGGGAACAAGGGTTAGAAATTGCAGAAGCATTTGTCAGAA
GTGGTGCTGTCGATATCGTTGTAGTCGATTCTGTTGCTGCCTTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGCGAT
ACTCATGTTGGTTTACAAGCCCGTTTGATGTCTCAAGCCTTAAGAAAGCTTTCAGGCGCAATTTCAAAATCAAATACAAC
AGCAGTATTTATTAACCAAATTCGTGAGAAAGTTGGCGTGATGTTCGGTAACCCTGAAGTTACACCTGGCGGACGTGCAT
TGAAATTCTATAGTTCAGTCCGTTTAGAAGTGCGCCGTGCTGAACAGTTGAAACAAGGACAAGAGATTGTAGGTAATAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTTGCTCCACCATTTAGAGTTGCAGAAGTTGATATCATGTATGGTAAAGGAAT
TTCTAAAGAAGGCGAATTAATTGATCTTGGTGCTGAACACGAAATTGTAGATAAATCAGGAGCTTGGTACTCATATAATG
GTGAACGTATGGGTCAAGGTAAAGAAAATGTGAAATTATACCTTAAAGAAAATCCAGCTATTCGTGAAGAAATTGATCAT
AAATTACGTGAGAAATTAGGCATATTTGATGGTGACGTTGACGATAAAGAAGCTGAAAAACCAGCTACGCTCTTCGATGA
AGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C6WMK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

93.41

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

71.037

93.983

0.668
  recA Streptococcus mutans UA159

65.306

98.281

0.642
  recA Neisseria gonorrhoeae MS11

63.873

99.14

0.633
  recA Neisseria gonorrhoeae MS11

63.873

99.14

0.633
  recA Neisseria gonorrhoeae strain FA1090

63.873

99.14

0.633
  recA Streptococcus pyogenes NZ131

67.173

94.269

0.633
  recA Streptococcus pneumoniae Rx1

65.766

95.415

0.628
  recA Streptococcus mitis NCTC 12261

65.766

95.415

0.628
  recA Streptococcus pneumoniae D39

65.766

95.415

0.628
  recA Streptococcus pneumoniae R6

65.766

95.415

0.628
  recA Streptococcus pneumoniae TIGR4

65.766

95.415

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.842

0.625
  recA Streptococcus mitis SK321

65.465

95.415

0.625
  recA Acinetobacter baumannii D1279779

62.356

99.713

0.622
  recA Acinetobacter baylyi ADP1

65.951

93.41

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.438

94.269

0.607
  recA Helicobacter pylori 26695

64.634

93.983

0.607
  recA Vibrio cholerae strain A1552

64.724

93.41

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.41

0.605
  recA Helicobacter pylori strain NCTC11637

64.329

93.983

0.605
  recA Ralstonia pseudosolanacearum GMI1000

65.495

89.685

0.587
  recA Glaesserella parasuis strain SC1401

58

100

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

94.842

0.582
  recA Pseudomonas stutzeri DSM 10701

61.963

93.41

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

91.691

0.553