Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AS19_RS09265 Genome accession   NZ_AP014613
Coordinates   2046229..2047263 (-) Length   344 a.a.
NCBI ID   WP_011589082.1    Uniprot ID   A0AAD1B5V8
Organism   Alcanivorax sp. NBRC 101098     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2041229..2052263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS19_RS09250 (AS19_18520) alaS 2041927..2044518 (-) 2592 WP_046961983.1 alanine--tRNA ligase -
  AS19_RS09255 (AS19_18530) - 2044753..2045520 (-) 768 WP_046961984.1 sulfite exporter TauE/SafE family protein -
  AS19_RS09260 (AS19_18540) - 2045772..2046236 (-) 465 WP_035461010.1 regulatory protein RecX -
  AS19_RS09265 (AS19_18550) recA 2046229..2047263 (-) 1035 WP_011589082.1 recombinase RecA Machinery gene
  AS19_RS09270 (AS19_18560) - 2047466..2047954 (-) 489 WP_046961985.1 CinA family protein -
  AS19_RS09275 (AS19_18570) - 2047996..2048715 (-) 720 WP_035461007.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AS19_RS09280 (AS19_18580) - 2049032..2050387 (-) 1356 WP_011589085.1 wax ester/triacylglycerol synthase family O-acyltransferase -
  AS19_RS09285 (AS19_18590) - 2050565..2051041 (-) 477 WP_035461004.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36897.01 Da        Isoelectric Point: 4.9424

>NTDB_id=66213 AS19_RS09265 WP_011589082.1 2046229..2047263(-) (recA) [Alcanivorax sp. NBRC 101098]
MSDKSKALSAALSQIERQFGKGSVMRMGDRKRERMPSISTGSLGLDVALGIGGLPKGRIVEIYGPESSGKTTLTLSVIAQ
AQKKGATCAFVDAEHALDPDYAEKLGVNVDDLIVSQPDTGEQALEITDMLVRSGAVDVVIVDSVAALVPKAEIEGEMGDT
HVGLQARLMSQALRKITGNVKNANTLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAVKQGDEVTGNET
RVKVVKNKVSPPFRQAEFQILYGQGINQLGEVLDLGVQQGLVDKSGAWYAYKGDKIGQGKQNACEYLRENPAIAEEIETE
IRARLLPDPTAEAPAEEAAPADDE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=66213 AS19_RS09265 WP_011589082.1 2046229..2047263(-) (recA) [Alcanivorax sp. NBRC 101098]
ATGAGCGATAAAAGTAAGGCGCTGTCCGCTGCGCTGTCACAGATTGAGCGCCAATTTGGCAAAGGTTCTGTCATGCGCAT
GGGCGATCGCAAGCGTGAGCGTATGCCCTCCATCTCGACCGGCTCACTGGGGCTGGATGTTGCCTTGGGTATTGGCGGTC
TGCCCAAGGGCCGTATTGTCGAGATTTATGGCCCTGAATCCTCCGGAAAAACCACCCTGACATTGAGCGTGATTGCCCAA
GCTCAAAAAAAAGGCGCCACCTGTGCCTTCGTGGATGCTGAGCATGCGCTAGACCCGGATTACGCAGAAAAGCTGGGCGT
AAACGTGGACGACCTGATTGTTTCCCAGCCAGACACCGGAGAGCAGGCACTGGAAATCACCGATATGCTGGTGCGATCCG
GCGCGGTGGATGTGGTCATCGTCGATTCTGTGGCGGCGCTGGTGCCGAAAGCTGAAATCGAAGGGGAAATGGGTGACACC
CACGTGGGGTTGCAGGCTCGTCTGATGAGCCAGGCGCTGCGTAAAATTACCGGTAATGTGAAAAACGCCAATACACTGGT
GGTCTTCATTAACCAGATTCGCATGAAGATTGGTGTGATGTTTGGTAACCCGGAAACCACCACCGGTGGTAATGCCCTGA
AGTTCTACTCCTCTGTACGCTTGGATATCCGCCGTATTGGTGCGGTGAAGCAGGGTGACGAAGTAACCGGTAACGAAACC
CGGGTGAAGGTGGTGAAAAACAAGGTGTCGCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCCAGGGCATTAA
TCAGCTGGGAGAAGTGTTGGACTTGGGTGTTCAACAGGGGTTGGTGGACAAATCTGGCGCCTGGTATGCCTACAAAGGCG
ACAAGATTGGCCAAGGTAAGCAGAACGCCTGCGAGTACCTGCGAGAAAACCCGGCCATTGCCGAAGAAATTGAAACCGAA
ATCCGGGCCCGCCTGTTGCCGGACCCTACAGCTGAAGCCCCGGCAGAAGAGGCCGCCCCCGCTGACGATGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.633

99.709

0.814
  recA Acinetobacter baylyi ADP1

72.727

99.128

0.721
  recA Acinetobacter baumannii D1279779

73.78

95.349

0.703
  recA Glaesserella parasuis strain SC1401

70.088

99.128

0.695
  recA Vibrio cholerae strain A1552

69.795

99.128

0.692
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.795

99.128

0.692
  recA Neisseria gonorrhoeae MS11

72.981

93.605

0.683
  recA Neisseria gonorrhoeae MS11

72.981

93.605

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.981

93.605

0.683
  recA Ralstonia pseudosolanacearum GMI1000

71.746

91.57

0.657
  recA Helicobacter pylori 26695

61.765

98.837

0.61
  recA Helicobacter pylori strain NCTC11637

61.765

98.837

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.815

94.186

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

93.605

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

95.64

0.584
  recA Streptococcus mitis NCTC 12261

57.184

100

0.578
  recA Streptococcus mitis SK321

56.609

100

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

57.602

99.419

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.462

94.477

0.552
  recA Streptococcus pneumoniae R6

57.927

95.349

0.552
  recA Streptococcus pneumoniae TIGR4

57.927

95.349

0.552
  recA Streptococcus pneumoniae D39

57.927

95.349

0.552
  recA Streptococcus pneumoniae Rx1

57.927

95.349

0.552
  recA Streptococcus mutans UA159

58.282

94.767

0.552
  recA Streptococcus pyogenes NZ131

57.187

95.058

0.544
  recA Lactococcus lactis subsp. cremoris KW2

56.748

94.767

0.538

Multiple sequence alignment