Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKO97_RS02830 Genome accession   NZ_CP092832
Coordinates   727382..728383 (-) Length   333 a.a.
NCBI ID   WP_241104557.1    Uniprot ID   -
Organism   Flavobacterium sp. HJ-32-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 722382..733383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKO97_RS02815 (MKO97_02815) - 724622..726316 (-) 1695 WP_241104554.1 hypothetical protein -
  MKO97_RS02820 (MKO97_02820) - 726313..726855 (-) 543 WP_241104555.1 RNA polymerase sigma factor -
  MKO97_RS02825 (MKO97_02825) - 726870..727277 (-) 408 WP_241104556.1 hypothetical protein -
  MKO97_RS02830 (MKO97_02830) recA 727382..728383 (-) 1002 WP_241104557.1 recombinase RecA Machinery gene
  MKO97_RS02835 (MKO97_02835) - 728524..729261 (+) 738 WP_241104558.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  MKO97_RS02840 (MKO97_02840) - 729267..730262 (+) 996 WP_241104559.1 acyl-ACP desaturase -
  MKO97_RS02845 (MKO97_02845) - 730350..731003 (+) 654 WP_241104560.1 HD domain-containing protein -
  MKO97_RS02850 (MKO97_02850) - 731019..731318 (-) 300 WP_241104561.1 hypothetical protein -
  MKO97_RS02855 (MKO97_02855) pyk 731596..733026 (-) 1431 WP_241104562.1 pyruvate kinase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36164.28 Da        Isoelectric Point: 5.3511

>NTDB_id=660686 MKO97_RS02830 WP_241104557.1 727382..728383(-) (recA) [Flavobacterium sp. HJ-32-4]
MSSEREAKLKALQLTLDKLDKTYGKGTVMKMGDQAVEEVETISSGSLGLDLALGVNGYPKGRVIEIFGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRNYAQKLNVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGE
MGDSKVGLHARLMSQALRKLTATISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSSQIKDGENVI
GNRTKVKVVKNKVAPPFRTAEFDIMYGEGVSKAGEILDLATEFEIVKKSGSWFAYGETRLGQGRDAVKALIKDNPELADE
LEEKIKDLIKSQN

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=660686 MKO97_RS02830 WP_241104557.1 727382..728383(-) (recA) [Flavobacterium sp. HJ-32-4]
ATGAGTTCAGAGAGAGAAGCCAAACTAAAAGCCTTACAGTTAACGCTTGACAAACTCGATAAGACCTACGGAAAAGGCAC
CGTCATGAAGATGGGCGACCAGGCCGTAGAGGAAGTCGAAACCATATCGTCCGGATCGCTCGGCCTCGACCTGGCTTTGG
GCGTTAATGGATACCCTAAAGGTCGTGTCATCGAAATCTTCGGCCCTGAATCTTCGGGTAAGACGACGCTGACCCTGCAT
GCTATTGCCGAGGCCCAAAAAGCCGGGGGCATCGCTGCCTTCATCGATGCAGAACATGCCTTTGACCGTAATTATGCCCA
GAAACTCAATGTAGACATCGAGAATCTTATCATATCGCAGCCCGATAACGGCGAACAGGCGCTCGAAATTGCCGAGAACC
TGATTCGTTCCGGCGCTATCGACATCGTCGTAATCGACTCGGTTGCGGCCTTGACACCGAAAAGCGAGATCGAAGGCGAA
ATGGGCGATTCTAAAGTAGGTCTGCATGCCCGTTTGATGTCACAGGCACTGCGGAAACTCACCGCCACTATCAGTAAAAC
CAACTGCACGGTGTTTTTCATCAACCAGTTGCGCGAGAAGATAGGCGTTATGTTTGGAAACCCGGAGACGACAACGGGTG
GTAACGCGTTGAAGTTCTACGCGTCGGTGCGTCTTGACATCCGTCGTTCGTCGCAGATCAAAGACGGAGAGAATGTCATC
GGGAACCGCACCAAAGTGAAAGTGGTAAAAAATAAAGTGGCACCTCCGTTCCGTACCGCTGAATTCGACATCATGTATGG
TGAAGGCGTTTCGAAAGCGGGTGAGATACTCGACCTGGCTACTGAGTTTGAAATCGTCAAGAAATCGGGGTCGTGGTTCG
CGTATGGCGAAACCCGCCTCGGACAAGGGCGGGATGCAGTGAAAGCACTCATCAAAGACAATCCGGAATTAGCCGACGAG
CTTGAGGAAAAGATCAAAGACCTCATCAAATCGCAGAATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

75.444

100

0.766
  recA Helicobacter pylori strain NCTC11637

64.22

98.198

0.631
  recA Helicobacter pylori 26695

64.22

98.198

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

97.598

0.631
  recA Ralstonia pseudosolanacearum GMI1000

67.314

92.793

0.625
  recA Glaesserella parasuis strain SC1401

63.11

98.498

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.486

96.396

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.705

93.694

0.616
  recA Neisseria gonorrhoeae MS11

65.705

93.694

0.616
  recA Neisseria gonorrhoeae MS11

65.705

93.694

0.616
  recA Acinetobacter baylyi ADP1

63.75

96.096

0.613
  recA Acinetobacter baumannii D1279779

63.043

96.697

0.61
  recA Pseudomonas stutzeri DSM 10701

59.697

99.099

0.592
  recA Streptococcus mitis NCTC 12261

59.756

98.498

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

60.372

96.997

0.586
  recA Streptococcus mitis SK321

59.451

98.498

0.586
  recA Streptococcus pneumoniae D39

59.146

98.498

0.583
  recA Streptococcus pneumoniae TIGR4

59.146

98.498

0.583
  recA Streptococcus pneumoniae Rx1

59.146

98.498

0.583
  recA Streptococcus pneumoniae R6

59.146

98.498

0.583
  recA Lactococcus lactis subsp. cremoris KW2

60.125

96.396

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.568

97.297

0.58
  recA Vibrio cholerae strain A1552

59.568

97.297

0.58
  recA Streptococcus pyogenes NZ131

59.813

96.396

0.577
  recA Streptococcus mutans UA159

58.255

96.396

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.615

97.598

0.553