Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | MKK04_RS05945 | Genome accession | NZ_CP092827 |
| Coordinates | 1281796..1282863 (+) | Length | 355 a.a. |
| NCBI ID | WP_085626456.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. LS.1a | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1254349..1288455 | 1281796..1282863 | within | 0 |
Gene organization within MGE regions
Location: 1254349..1288455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MKK04_RS05795 (MKK04_05795) | - | 1254349..1255245 (-) | 897 | WP_063911522.1 | LysR substrate-binding domain-containing protein | - |
| MKK04_RS05800 (MKK04_05800) | - | 1255353..1256465 (+) | 1113 | WP_016712915.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| MKK04_RS05805 (MKK04_05805) | fghA | 1256474..1257328 (+) | 855 | WP_191471930.1 | S-formylglutathione hydrolase | - |
| MKK04_RS05810 (MKK04_05810) | ispF | 1257477..1257950 (+) | 474 | WP_159265991.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| MKK04_RS05815 (MKK04_05815) | truD | 1257947..1259005 (+) | 1059 | WP_207829425.1 | tRNA pseudouridine(13) synthase TruD | - |
| MKK04_RS05820 (MKK04_05820) | surE | 1258993..1259742 (+) | 750 | WP_025337991.1 | 5'/3'-nucleotidase SurE | - |
| MKK04_RS05825 (MKK04_05825) | - | 1259778..1260416 (+) | 639 | WP_015269209.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| MKK04_RS05830 (MKK04_05830) | - | 1260638..1261495 (+) | 858 | WP_233693981.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| MKK04_RS05835 (MKK04_05835) | rpoS | 1261604..1262611 (+) | 1008 | WP_063911526.1 | RNA polymerase sigma factor RpoS | - |
| MKK04_RS05840 (MKK04_05840) | fdxA | 1263230..1263553 (-) | 324 | WP_004375459.1 | ferredoxin FdxA | - |
| MKK04_RS05845 (MKK04_05845) | mutS | 1263694..1266267 (-) | 2574 | WP_241106331.1 | DNA mismatch repair protein MutS | - |
| MKK04_RS05850 (MKK04_05850) | - | 1266417..1267154 (+) | 738 | WP_207829422.1 | S24 family peptidase | - |
| MKK04_RS05855 (MKK04_05855) | - | 1267630..1267968 (+) | 339 | WP_207829419.1 | phage holin family protein | - |
| MKK04_RS05860 (MKK04_05860) | - | 1267980..1268477 (+) | 498 | WP_207829418.1 | hypothetical protein | - |
| MKK04_RS05865 (MKK04_05865) | - | 1268474..1269034 (+) | 561 | WP_207829417.1 | phage baseplate assembly protein V | - |
| MKK04_RS05870 (MKK04_05870) | - | 1269107..1269433 (+) | 327 | WP_207829416.1 | GPW/gp25 family protein | - |
| MKK04_RS05875 (MKK04_05875) | - | 1269430..1270311 (+) | 882 | WP_207829414.1 | baseplate J/gp47 family protein | - |
| MKK04_RS05880 (MKK04_05880) | - | 1270313..1270921 (+) | 609 | WP_233687938.1 | phage tail protein I | - |
| MKK04_RS26485 | - | 1270914..1273331 (+) | 2418 | WP_272493177.1 | phage tail protein | - |
| MKK04_RS05890 (MKK04_05890) | - | 1273340..1273780 (+) | 441 | WP_241106332.1 | phage tail protein | - |
| MKK04_RS05895 (MKK04_05895) | - | 1273869..1275035 (+) | 1167 | WP_241106333.1 | phage tail sheath family protein | - |
| MKK04_RS05900 (MKK04_05900) | - | 1275049..1275558 (+) | 510 | WP_027920000.1 | phage major tail tube protein | - |
| MKK04_RS05905 (MKK04_05905) | - | 1275569..1275871 (+) | 303 | WP_207829405.1 | phage tail assembly protein | - |
| MKK04_RS05910 (MKK04_05910) | - | 1275997..1277991 (+) | 1995 | WP_241106334.1 | hypothetical protein | - |
| MKK04_RS05915 (MKK04_05915) | - | 1278001..1278846 (+) | 846 | WP_241106335.1 | phage tail protein | - |
| MKK04_RS05920 (MKK04_05920) | - | 1278821..1279027 (+) | 207 | WP_233687932.1 | tail protein X | - |
| MKK04_RS05925 (MKK04_05925) | - | 1279032..1280066 (+) | 1035 | WP_207829392.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| MKK04_RS05930 (MKK04_05930) | - | 1280091..1280639 (+) | 549 | WP_207829389.1 | glycoside hydrolase family 19 protein | - |
| MKK04_RS05935 (MKK04_05935) | - | 1280633..1281118 (+) | 486 | WP_241106336.1 | lysis system i-spanin subunit Rz | - |
| MKK04_RS05940 (MKK04_05940) | - | 1281210..1281692 (+) | 483 | WP_207829378.1 | CinA family protein | - |
| MKK04_RS05945 (MKK04_05945) | recA | 1281796..1282863 (+) | 1068 | WP_085626456.1 | recombinase RecA | Machinery gene |
| MKK04_RS05950 (MKK04_05950) | recX | 1282885..1283355 (+) | 471 | WP_046616639.1 | recombination regulator RecX | - |
| MKK04_RS05955 (MKK04_05955) | - | 1283518..1284636 (-) | 1119 | WP_025337997.1 | LOG family protein | - |
| MKK04_RS05960 (MKK04_05960) | - | 1284799..1285008 (+) | 210 | WP_207829376.1 | hypothetical protein | - |
| MKK04_RS05965 (MKK04_05965) | - | 1285014..1285433 (-) | 420 | WP_207829374.1 | quorum-sensing-regulated virulence factor family protein | - |
| MKK04_RS05970 (MKK04_05970) | - | 1285654..1286364 (+) | 711 | WP_013971344.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| MKK04_RS05975 (MKK04_05975) | erdR | 1286443..1287093 (+) | 651 | WP_016715442.1 | response regulator transcription factor ErdR | - |
| MKK04_RS05980 (MKK04_05980) | - | 1287167..1287532 (+) | 366 | WP_015269218.1 | diacylglycerol kinase | - |
| MKK04_RS05985 (MKK04_05985) | finR | 1287529..1288455 (-) | 927 | WP_004375481.1 | LysR family transcriptional regulator FinR | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 37529.92 Da Isoelectric Point: 5.3117
>NTDB_id=660525 MKK04_RS05945 WP_085626456.1 1281796..1282863(+) (recA) [Pseudomonas sp. LS.1a]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLTAGAVAAAGKAAAVEADADDMADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYAYQGNKIGQGKANAAKYLAENPAIGAEIEK
QIREKLLTAGAVAAAGKAAAVEADADDMADADAGY
Nucleotide
Download Length: 1068 bp
>NTDB_id=660525 MKK04_RS05945 WP_085626456.1 1281796..1282863(+) (recA) [Pseudomonas sp. LS.1a]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCTATCCCTGCCATCTCCACCGGCTCGCTGGGCCTGGACATTGCCCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGTCCGGAATCGTCGGGTAAGACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAACGGCGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGTAACGGCGAGATCATTGACCTGGGTGTTTCCCAGGGCCTGGTCGAGAAGTCCGGTGCCTGGTACGCCTACCAGG
GCAACAAGATCGGTCAAGGCAAAGCAAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGCGAGAAGCTGCTGACTGCTGGTGCTGTTGCGGCTGCTGGTAAGGCTGCTGCTGTCGAAGCTGATGCCGACGA
CATGGCCGACGCTGACGCCGGCTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAGGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCTATCCCTGCCATCTCCACCGGCTCGCTGGGCCTGGACATTGCCCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTCGAGATCTACGGTCCGGAATCGTCGGGTAAGACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAAAACGGCGCCACCTGCGCCTTCGTCGACGCCGAACACGCCCTCGACCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCGCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCTGTTGACGTGATCATCGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGCCTGCAGGCGCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGTCTGGATATCCGCCGTACCGGCGCGGTCAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTATGGCAAGGGCAT
CTACCGTAACGGCGAGATCATTGACCTGGGTGTTTCCCAGGGCCTGGTCGAGAAGTCCGGTGCCTGGTACGCCTACCAGG
GCAACAAGATCGGTCAAGGCAAAGCAAACGCTGCCAAGTACCTGGCTGAGAACCCGGCTATTGGTGCCGAGATCGAGAAG
CAGATTCGCGAGAAGCTGCTGACTGCTGGTGCTGTTGCGGCTGCTGGTAAGGCTGCTGCTGTCGAAGCTGATGCCGACGA
CATGGCCGACGCTGACGCCGGCTATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.