Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MH928_RS04015 Genome accession   NZ_CP092822
Coordinates   917639..918643 (-) Length   334 a.a.
NCBI ID   WP_121376260.1    Uniprot ID   -
Organism   Flavobacterium sp. WW92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 912639..923643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MH928_RS03990 (MH928_03990) trpS 912923..913897 (-) 975 WP_264528401.1 tryptophan--tRNA ligase -
  MH928_RS03995 (MH928_03995) - 914023..914784 (+) 762 WP_264528402.1 lysophospholipid acyltransferase family protein -
  MH928_RS04000 (MH928_04000) - 914856..916544 (-) 1689 WP_264528403.1 outer membrane beta-barrel protein -
  MH928_RS04005 (MH928_04005) - 916541..917086 (-) 546 WP_264528404.1 sigma-70 family RNA polymerase sigma factor -
  MH928_RS04010 (MH928_04010) - 917111..917539 (-) 429 WP_182493165.1 hypothetical protein -
  MH928_RS04015 (MH928_04015) recA 917639..918643 (-) 1005 WP_121376260.1 recombinase RecA Machinery gene
  MH928_RS04020 (MH928_04020) - 918795..919529 (+) 735 WP_121375769.1 lysophospholipid acyltransferase family protein -
  MH928_RS04025 (MH928_04025) - 919534..920529 (+) 996 WP_121375770.1 acyl-ACP desaturase -
  MH928_RS04030 (MH928_04030) - 920575..921228 (+) 654 WP_170148776.1 HD domain-containing protein -
  MH928_RS04035 (MH928_04035) - 921267..922049 (-) 783 WP_264528405.1 enoyl-CoA hydratase-related protein -
  MH928_RS04040 (MH928_04040) - 922084..923499 (-) 1416 WP_182493528.1 ATP-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36165.39 Da        Isoelectric Point: 5.8412

>NTDB_id=660376 MH928_RS04015 WP_121376260.1 917639..918643(-) (recA) [Flavobacterium sp. WW92]
MSSEKEAKLKALQLTLDKLDKTYGKGTVMKLGDRAVEEVETISSGSLGLDLALGVNGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRSYAEKLGVDVENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGTISKTHCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSSQIKDGENVI
GNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEVVKKSGSWFSYGDTKLGQGRDAVKALIKDNPELAEE
LELKIKSLIKENNS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=660376 MH928_RS04015 WP_121376260.1 917639..918643(-) (recA) [Flavobacterium sp. WW92]
ATGAGTTCAGAGAAAGAAGCCAAATTGAAAGCGTTGCAACTAACGCTTGATAAATTAGATAAGACCTACGGTAAAGGTAC
CGTAATGAAGCTGGGTGACCGCGCTGTTGAAGAAGTAGAAACAATTTCATCCGGATCTTTAGGATTGGATTTAGCTCTTG
GAGTGAATGGATATCCAAAAGGAAGAATTATTGAAATTTACGGACCTGAATCTTCGGGTAAGACCACATTAACTTTGCAT
GCGATTGCTGAAGCTCAAAAGGCTGGCGGCATTGCTGCTTTTATTGATGCGGAACATGCTTTTGACAGAAGTTATGCAGA
AAAATTAGGCGTAGATGTAGAAAATCTTATCATTTCACAACCAGACAACGGAGAGCAAGCTTTAGAAATTGCAGAAAACC
TAATCCGTTCTGGCGCAATTGATATTGTTGTAATTGACTCTGTTGCCGCCTTGACGCCGAAAAGCGAGATTGAAGGCGAA
ATGGGAGATTCAAAGATGGGACTTCACGCTAGATTGATGTCGCAAGCCTTGAGAAAATTAACCGGAACAATCAGCAAAAC
GCATTGTACCGTTTTCTTCATCAACCAGCTTCGTGAAAAAATCGGTGTAATGTTCGGAAATCCAGAAACGACAACAGGTG
GTAATGCCTTGAAATTTTATGCTTCGGTTCGTTTAGACATCAGAAGATCTTCGCAGATTAAAGATGGAGAAAACGTAATC
GGAAACAGAACAAAAGTAAAAGTCGTAAAAAACAAAGTGGCTCCGCCATTCAAGACAGCAGAATTCGACATTATGTATGG
TGAAGGAGTTTCTAAAACTGGAGAAATTTTAGATCTGGCAGTAGAATTTGAAGTCGTGAAAAAATCAGGCTCTTGGTTCA
GCTACGGCGACACGAAACTCGGCCAAGGTCGAGATGCAGTAAAAGCCTTAATCAAAGACAATCCAGAATTGGCTGAAGAA
TTAGAGCTGAAAATCAAATCGCTGATTAAAGAAAATAATAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.518

99.401

0.79
  recA Helicobacter pylori 26695

65.549

98.204

0.644
  recA Helicobacter pylori strain NCTC11637

65.549

98.204

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

96.108

0.632
  recA Acinetobacter baumannii D1279779

65.732

96.108

0.632
  recA Glaesserella parasuis strain SC1401

63.83

98.503

0.629
  recA Ralstonia pseudosolanacearum GMI1000

68.182

92.216

0.629
  recA Acinetobacter baylyi ADP1

65.517

95.509

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

64.286

96.407

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.385

93.413

0.611
  recA Neisseria gonorrhoeae MS11

65.385

93.413

0.611
  recA Neisseria gonorrhoeae MS11

65.385

93.413

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.42

97.006

0.596
  recA Vibrio cholerae strain A1552

61.42

97.006

0.596
  recA Lactococcus lactis subsp. cremoris KW2

61.491

96.407

0.593
  recA Streptococcus mitis NCTC 12261

61.682

96.108

0.593
  recA Streptococcus mitis SK321

61.682

96.108

0.593
  recA Streptococcus pneumoniae D39

61.18

96.407

0.59
  recA Streptococcus pneumoniae TIGR4

61.18

96.407

0.59
  recA Streptococcus pneumoniae Rx1

61.18

96.407

0.59
  recA Streptococcus pneumoniae R6

61.18

96.407

0.59
  recA Streptococcus pyogenes NZ131

60.681

96.707

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

60.681

96.707

0.587
  recA Streptococcus mutans UA159

58.735

99.401

0.584
  recA Pseudomonas stutzeri DSM 10701

60.559

96.407

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.846

97.305

0.563