Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKS83_RS09970 Genome accession   NZ_CP092711
Coordinates   2247549..2248553 (+) Length   334 a.a.
NCBI ID   WP_240583039.1    Uniprot ID   A0A2W6TNS6
Organism   Chryseobacterium sp. Y16C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242549..2253553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS83_RS09955 (MKS83_09955) gap 2243140..2244144 (+) 1005 WP_029295781.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  MKS83_RS09960 (MKS83_09960) - 2244267..2246021 (-) 1755 WP_240583037.1 DUF4047 domain-containing protein -
  MKS83_RS09965 (MKS83_09965) - 2246196..2247392 (+) 1197 WP_240583038.1 oxygenase MpaB family protein -
  MKS83_RS09970 (MKS83_09970) recA 2247549..2248553 (+) 1005 WP_240583039.1 recombinase RecA Machinery gene
  MKS83_RS09975 (MKS83_09975) - 2248656..2251553 (-) 2898 WP_240583040.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35909.13 Da        Isoelectric Point: 5.5717

>NTDB_id=659755 MKS83_RS09970 WP_240583039.1 2247549..2248553(+) (recA) [Chryseobacterium sp. Y16C]
MSNADDKKKALALVLEKLDKTYGKGTVMTLGDSSVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKNGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVEQGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELSE
ELENKIKEEIATKK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=659755 MKS83_RS09970 WP_240583039.1 2247549..2248553(+) (recA) [Chryseobacterium sp. Y16C]
ATGAGCAACGCAGACGATAAAAAGAAAGCACTTGCCTTAGTGCTTGAAAAACTAGATAAAACATACGGAAAGGGAACTGT
AATGACTTTAGGAGACAGTTCTGTGGATAATACCATTGAAGTAATTCCTTCAGGATCCTTAGGATTAGACATCGCTTTAG
GTGTTGGTGGTTATCCAAGAGGAAGAATCATTGAAATCTACGGTCCGGAATCTTCAGGTAAAACAACTTTAACACTTCAT
GCCATTGCTGAGGCTCAGAAAGCAGGAGGAATTGCTGCATTCATTGATGCTGAACATGCATTCGACAGAACCTACGCTGC
CAAGTTAGGAATTGATTTAGAAAACTTAATTATTTCCCAGCCTGATAACGGGGAACAAGCATTAGAAATTGCTGATAACC
TTATCCGTTCAGGAGCGATAGATATTGTAGTCATCGACTCAGTAGCTGCACTTACTCCAAAAGCGGAAATAGAAGGGGAA
ATGGGTGATTCCAAAATGGGTCTTCATGCAAGATTGATGTCTCAGGCATTAAGAAAATTAACGGCTACGATTTCAAGAAC
AAAATGTACGGTAATCTTCATCAACCAGTTGAGAGAAAAAATCGGAGTAATGTTCGGGAATCCTGAAACAACAACCGGTG
GTAATGCTTTGAAATTTTACGCTTCTGTGAGAATTGATATCAGAAAAGCTTCTGCTCCAATTAAAAACGGAGATGAAGCG
ATCGGAAGCCGTGTAAAAGTGAAAATTGTGAAAAACAAAGTAGCTCCGCCTTTCAAACAGGCAGAGTTCGATATTATGTA
TGGTGAAGGAGTTTCTAAAACAGGAGAAATTCTGGATCAGGCCGTAGAACAGGGAATTGTAAAGAAAAGCGGTTCTTGGT
TCAGCTATGAAGAAACAAAATTAGGTCAAGGTCGTGATGCGGTGAAAGACGTATTAAAGGACAATCCTGAACTTTCTGAA
GAGCTGGAAAATAAAATTAAAGAAGAGATTGCTACTAAAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2W6TNS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.762

100

0.802
  recA Acinetobacter baylyi ADP1

65.046

98.503

0.641
  recA Acinetobacter baumannii D1279779

64.024

98.204

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.72

98.204

0.626
  recA Glaesserella parasuis strain SC1401

63.526

98.503

0.626
  recA Helicobacter pylori strain NCTC11637

62.162

99.701

0.62
  recA Helicobacter pylori 26695

62.162

99.701

0.62
  recA Ralstonia pseudosolanacearum GMI1000

66.134

93.713

0.62
  recA Neisseria gonorrhoeae MS11

63.58

97.006

0.617
  recA Neisseria gonorrhoeae MS11

63.58

97.006

0.617
  recA Neisseria gonorrhoeae strain FA1090

63.58

97.006

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

62.963

97.006

0.611
  recA Streptococcus mitis NCTC 12261

58.824

100

0.599
  recA Pseudomonas stutzeri DSM 10701

61.043

97.605

0.596
  recA Lactococcus lactis subsp. cremoris KW2

60.123

97.605

0.587
  recA Streptococcus pyogenes NZ131

60.123

97.605

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

60.372

96.707

0.584
  recA Streptococcus mitis SK321

60

97.305

0.584
  recA Vibrio cholerae strain A1552

59.877

97.006

0.581
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.877

97.006

0.581
  recA Streptococcus pneumoniae Rx1

59.385

97.305

0.578
  recA Streptococcus pneumoniae D39

59.385

97.305

0.578
  recA Streptococcus pneumoniae R6

59.385

97.305

0.578
  recA Streptococcus pneumoniae TIGR4

59.385

97.305

0.578
  recA Streptococcus mutans UA159

59.202

97.605

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.364

98.802

0.557