Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATS73_RS02470 Genome accession   NZ_CP092598
Coordinates   520604..521647 (+) Length   347 a.a.
NCBI ID   WP_006791966.1    Uniprot ID   A0AAD0CE27
Organism   Pseudoalteromonas sp. H100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 515604..526647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATS73_RS02455 (ATS73_002430) rpoS 516400..517374 (+) 975 WP_058428487.1 RNA polymerase sigma factor RpoS -
  ATS73_RS02460 (ATS73_002435) mutS 517443..520025 (-) 2583 WP_058428488.1 DNA mismatch repair protein MutS -
  ATS73_RS02465 (ATS73_002440) - 520047..520538 (+) 492 WP_058428489.1 CinA family protein -
  ATS73_RS02470 (ATS73_002445) recA 520604..521647 (+) 1044 WP_006791966.1 recombinase RecA Machinery gene
  ATS73_RS02475 (ATS73_002450) - 521917..524040 (-) 2124 WP_058428490.1 TonB-dependent siderophore receptor -
  ATS73_RS02480 (ATS73_002455) - 524276..525445 (-) 1170 WP_006791968.1 DcaP family trimeric outer membrane transporter -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37447.02 Da        Isoelectric Point: 5.0465

>NTDB_id=659225 ATS73_RS02470 WP_006791966.1 520604..521647(+) (recA) [Pseudoalteromonas sp. H100]
MNDNKQKALDAALSQIERQFGKGSIMKLGDNKALNIDAVSTGSLGIDIALGIGGLPMGRIVEVYGPESSGKTTLTLQVIA
QAQKEGKTCAFVDAEHALDPVYAQKLGVNIDELLVSQPDTGEQALEICDMLVRSSAVDVVIVDSVAALTPKAEIEGDMGD
SHMGLQARLMSQALRKLTGNIKRSNTLCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRIDIRRIGSVKEGDEVVGNE
TRVKIVKNKVAPPFKQAEFIIMYGEGISKQGELIDLGVKHKIVEKAGAWYSYNGNKVGQGKNNSIKFLKENVEIANEIEG
KLRDMLLLKATIEPEDGEDVLGDDADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=659225 ATS73_RS02470 WP_006791966.1 520604..521647(+) (recA) [Pseudoalteromonas sp. H100]
ATGAACGATAACAAACAAAAAGCGTTAGACGCTGCACTATCACAAATTGAGCGTCAATTTGGTAAAGGTTCAATCATGAA
GCTGGGCGACAATAAAGCCCTGAACATTGATGCAGTATCTACAGGTTCATTAGGGATCGACATTGCTTTAGGCATAGGCG
GTTTACCAATGGGTCGTATTGTTGAAGTATATGGTCCTGAATCTTCAGGTAAAACAACACTGACTTTGCAAGTTATCGCA
CAAGCTCAAAAAGAAGGTAAAACATGTGCCTTTGTTGATGCTGAGCATGCTCTAGATCCTGTATACGCTCAAAAACTAGG
TGTTAACATTGATGAGCTTTTAGTTTCTCAACCAGATACGGGTGAGCAAGCGTTAGAAATTTGTGACATGTTAGTGCGTT
CAAGTGCTGTAGATGTTGTGATTGTCGATTCAGTTGCAGCCCTAACACCTAAAGCTGAAATTGAAGGCGACATGGGCGAC
TCGCACATGGGCTTACAAGCACGTTTAATGTCGCAAGCATTACGTAAGCTTACGGGTAATATTAAACGTTCAAATACATT
ATGTATTTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGTAACCCAGAAACAACAACCGGTGGTAACGCGC
TTAAGTTTTACGCATCAGTTCGTATTGATATTCGTCGTATTGGCTCGGTGAAAGAAGGTGATGAAGTTGTTGGTAACGAA
ACGCGCGTTAAAATTGTTAAAAACAAAGTAGCGCCTCCGTTTAAACAAGCCGAATTTATCATCATGTATGGTGAAGGTAT
TTCTAAGCAAGGCGAGTTAATTGATTTAGGTGTTAAGCACAAAATTGTTGAAAAAGCAGGTGCTTGGTACAGCTACAATG
GTAACAAGGTAGGCCAAGGTAAAAACAATTCAATTAAATTCTTAAAAGAAAACGTAGAAATTGCAAACGAAATTGAAGGC
AAACTACGCGATATGTTATTGCTTAAAGCGACAATTGAACCAGAAGATGGTGAAGATGTACTAGGTGATGACGCTGACCT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

78.593

94.236

0.741
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.593

94.236

0.741
  recA Pseudomonas stutzeri DSM 10701

73.837

99.135

0.732
  recA Acinetobacter baumannii D1279779

72.832

99.712

0.726
  recA Glaesserella parasuis strain SC1401

74.03

96.542

0.715
  recA Acinetobacter baylyi ADP1

74.924

95.389

0.715
  recA Neisseria gonorrhoeae MS11

70.349

99.135

0.697
  recA Neisseria gonorrhoeae MS11

70.349

99.135

0.697
  recA Neisseria gonorrhoeae strain FA1090

70.349

99.135

0.697
  recA Ralstonia pseudosolanacearum GMI1000

73.312

89.625

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.848

98.847

0.631
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

92.507

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

96.254

0.611
  recA Helicobacter pylori 26695

62.687

96.542

0.605
  recA Helicobacter pylori strain NCTC11637

62.687

96.542

0.605
  recA Streptococcus pneumoniae Rx1

59.827

99.712

0.597
  recA Streptococcus pneumoniae TIGR4

59.827

99.712

0.597
  recA Streptococcus pneumoniae R6

59.827

99.712

0.597
  recA Streptococcus pneumoniae D39

59.827

99.712

0.597
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.382

91.931

0.573
  recA Streptococcus mutans UA159

60.55

94.236

0.571
  recA Streptococcus pyogenes NZ131

59.939

94.236

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

92.507

0.553
  recA Lactococcus lactis subsp. cremoris KW2

58.204

93.084

0.542