Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKD41_RS12180 Genome accession   NZ_CP092487
Coordinates   2975862..2976875 (+) Length   337 a.a.
NCBI ID   WP_240242563.1    Uniprot ID   -
Organism   Lutibacter sp. A64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2970862..2981875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD41_RS12145 (MKD41_12145) - 2971528..2972091 (+) 564 WP_240242556.1 TetR/AcrR family transcriptional regulator -
  MKD41_RS12150 (MKD41_12150) - 2972156..2972587 (+) 432 WP_240242557.1 hypothetical protein -
  MKD41_RS12155 (MKD41_12155) - 2972605..2973168 (+) 564 WP_240242558.1 carboxymuconolactone decarboxylase family protein -
  MKD41_RS12160 (MKD41_12160) - 2973295..2973963 (+) 669 WP_240242559.1 haloacid dehalogenase type II -
  MKD41_RS12165 (MKD41_12165) - 2974046..2974762 (+) 717 WP_240242560.1 3-ketoacyl-ACP reductase -
  MKD41_RS12170 (MKD41_12170) - 2974872..2975213 (-) 342 WP_240242561.1 cupin -
  MKD41_RS12175 (MKD41_12175) - 2975248..2975763 (-) 516 WP_240242562.1 DinB family protein -
  MKD41_RS12180 (MKD41_12180) recA 2975862..2976875 (+) 1014 WP_240242563.1 recombinase RecA Machinery gene
  MKD41_RS12185 (MKD41_12185) - 2977100..2977537 (+) 438 WP_240242564.1 RimK/LysX family protein -
  MKD41_RS12190 (MKD41_12190) rimK 2977548..2978423 (+) 876 WP_240242565.1 30S ribosomal protein S6--L-glutamate ligase -
  MKD41_RS12195 (MKD41_12195) - 2978413..2979372 (+) 960 WP_240242566.1 succinylglutamate desuccinylase/aspartoacylase family protein -
  MKD41_RS12200 (MKD41_12200) - 2979376..2980323 (+) 948 WP_240242567.1 ABC transporter ATP-binding protein -
  MKD41_RS12205 (MKD41_12205) - 2980328..2981680 (-) 1353 WP_240242568.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36417.64 Da        Isoelectric Point: 5.1600

>NTDB_id=658030 MKD41_RS12180 WP_240242563.1 2975862..2976875(+) (recA) [Lutibacter sp. A64]
MAEDKEKAAKLKALQLTLDKLDKAYGKGTVMKMGDVAIDDIEAISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLT
LHAIAEAQKAGGIAAFIDAEHAFDRFYAQNLGIDVDNLIISQPDHGEQALEIADNLISSGAIDIVVVDSVAALTPKSEIE
GEMGDSKMGLHARLMSQALRKLTGTIHKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDR
VIGNSTKVKVVKNKVAPPFQVAEFDIMYGKGISKTGEILDLAVEFGIVKKSGSWFSYGETKLGQGRDAVKGLIFDNPELA
EELEIKIKDFINNQDED

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=658030 MKD41_RS12180 WP_240242563.1 2975862..2976875(+) (recA) [Lutibacter sp. A64]
ATGGCAGAAGATAAAGAAAAAGCAGCAAAATTAAAAGCATTACAGCTTACGTTAGATAAATTAGATAAGGCTTATGGAAA
AGGAACGGTAATGAAAATGGGAGATGTTGCAATAGATGATATTGAGGCAATTTCTTCAGGATCGTTAGGGTTAGATTTAG
CTTTAGGTGTTGGTGGTTATCCAAGAGGTAGAGTTATTGAAATATATGGCCCAGAATCATCGGGTAAAACAACATTAACA
TTGCATGCAATTGCCGAAGCACAAAAAGCAGGTGGTATTGCTGCCTTTATTGATGCAGAGCATGCTTTTGACCGTTTTTA
CGCACAAAATTTAGGAATAGATGTAGATAATTTAATTATTTCTCAACCAGATCACGGTGAGCAAGCATTAGAAATTGCAG
ATAATTTAATTAGTTCTGGAGCTATAGATATTGTAGTAGTAGATTCAGTTGCAGCACTTACACCAAAAAGTGAAATTGAA
GGTGAAATGGGAGATTCTAAAATGGGATTACACGCTCGTTTAATGTCGCAAGCACTTAGAAAATTAACAGGTACAATTCA
TAAAACAAACTGTACAGTTATATTTATTAACCAGTTACGTGAAAAAATTGGAGTTATGTTTGGTAACCCAGAAACAACTA
CTGGTGGTAACGCTTTAAAGTTTTATGCGTCTGTTCGTTTAGATATTAGAAGAAGAACTCAAATTAAAGATGGTGATCGT
GTTATAGGAAATAGTACAAAAGTTAAAGTTGTAAAAAATAAAGTTGCACCACCTTTTCAAGTTGCAGAATTTGATATTAT
GTACGGAAAAGGAATTTCTAAAACAGGTGAAATTTTAGATTTAGCTGTTGAATTTGGTATTGTAAAGAAAAGCGGTTCTT
GGTTTAGTTACGGTGAAACAAAATTAGGACAAGGTAGAGATGCCGTTAAAGGACTGATATTTGACAACCCAGAATTAGCA
GAAGAATTAGAAATAAAAATTAAAGATTTTATTAATAATCAAGATGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.994

96.736

0.745
  recA Ralstonia pseudosolanacearum GMI1000

64.97

99.11

0.644
  recA Glaesserella parasuis strain SC1401

65.031

96.736

0.629
  recA Acinetobacter baylyi ADP1

65.938

94.955

0.626
  recA Helicobacter pylori strain NCTC11637

62.315

100

0.623
  recA Acinetobacter baumannii D1279779

65.625

94.955

0.623
  recA Helicobacter pylori 26695

62.018

100

0.62
  recA Neisseria gonorrhoeae MS11

63.222

97.626

0.617
  recA Neisseria gonorrhoeae MS11

63.222

97.626

0.617
  recA Neisseria gonorrhoeae strain FA1090

63.222

97.626

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.863

95.252

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.585

97.329

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

63.722

94.065

0.599
  recA Pseudomonas stutzeri DSM 10701

63.009

94.659

0.596
  recA Streptococcus pyogenes NZ131

60.991

95.846

0.585
  recA Streptococcus mitis SK321

60.615

96.439

0.585
  recA Streptococcus mitis NCTC 12261

60.615

96.439

0.585
  recA Streptococcus pneumoniae R6

60.308

96.439

0.582
  recA Streptococcus pneumoniae D39

60.308

96.439

0.582
  recA Streptococcus pneumoniae TIGR4

60.308

96.439

0.582
  recA Streptococcus pneumoniae Rx1

60.308

96.439

0.582
  recA Vibrio cholerae strain A1552

60.123

96.736

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.123

96.736

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60

96.439

0.579
  recA Streptococcus mutans UA159

59.813

95.252

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.044

94.065

0.546