Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MHL31_RS10985 Genome accession   NZ_CP092480
Coordinates   2665267..2666280 (+) Length   337 a.a.
NCBI ID   WP_240226001.1    Uniprot ID   -
Organism   Lutibacter sp. A80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2660267..2671280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHL31_RS10955 (MHL31_10955) - 2661283..2661846 (+) 564 WP_240225995.1 TetR/AcrR family transcriptional regulator -
  MHL31_RS10960 (MHL31_10960) - 2661911..2662342 (+) 432 WP_240225996.1 hypothetical protein -
  MHL31_RS10965 (MHL31_10965) - 2662360..2662923 (+) 564 WP_240225997.1 carboxymuconolactone decarboxylase family protein -
  MHL31_RS10970 (MHL31_10970) - 2663049..2663717 (+) 669 WP_240225998.1 haloacid dehalogenase type II -
  MHL31_RS10975 (MHL31_10975) - 2663792..2664508 (+) 717 WP_240225999.1 3-ketoacyl-ACP reductase -
  MHL31_RS10980 (MHL31_10980) - 2664654..2665169 (-) 516 WP_240226000.1 DinB family protein -
  MHL31_RS10985 (MHL31_10985) recA 2665267..2666280 (+) 1014 WP_240226001.1 recombinase RecA Machinery gene
  MHL31_RS10990 (MHL31_10990) - 2666541..2666978 (+) 438 WP_240226002.1 RimK/LysX family protein -
  MHL31_RS10995 (MHL31_10995) rimK 2666989..2667864 (+) 876 WP_240226003.1 30S ribosomal protein S6--L-glutamate ligase -
  MHL31_RS11000 (MHL31_11000) - 2667854..2668813 (+) 960 WP_240226004.1 succinylglutamate desuccinylase/aspartoacylase family protein -
  MHL31_RS11005 (MHL31_11005) - 2668817..2669764 (+) 948 WP_240226005.1 ABC transporter ATP-binding protein -
  MHL31_RS11010 (MHL31_11010) - 2669770..2671122 (-) 1353 WP_240226006.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36404.64 Da        Isoelectric Point: 5.1562

>NTDB_id=657960 MHL31_RS10985 WP_240226001.1 2665267..2666280(+) (recA) [Lutibacter sp. A80]
MAEDKEKAAKLKALQLTLDKLDKAYGKGTVMKMGDVAIDDIDAISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLT
LHAIAEAQKAGGIAAFIDAEHAFDRFYAQNLGIDIDSLIISQPDHGEQALEIADNLISSGAIDIVVVDSVAALTPKSEIE
GEMGDSKMGLHARLMSQALRKLTGTIHKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRRTQIKDGDR
VIGNSTKVKVVKNKVAPPFQIAEFDIMYGKGISKTGEILDLAVEFGIVKKSGSWFSYGETKLGQGRDAVKGLIFDNPELA
EELEIKIKDFINNQDED

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=657960 MHL31_RS10985 WP_240226001.1 2665267..2666280(+) (recA) [Lutibacter sp. A80]
ATGGCAGAAGATAAAGAAAAAGCAGCAAAATTAAAAGCGTTACAACTTACGTTAGATAAATTAGATAAAGCTTACGGAAA
AGGTACAGTAATGAAAATGGGAGATGTAGCAATAGATGATATTGATGCAATTTCTTCAGGTTCGTTAGGATTAGATTTAG
CATTAGGTGTTGGAGGATACCCAAGAGGTAGAGTTATTGAAATATATGGACCAGAATCATCGGGTAAAACTACATTAACA
TTGCATGCAATAGCAGAAGCACAAAAGGCTGGTGGTATTGCTGCTTTTATAGATGCAGAACATGCTTTTGACCGTTTTTA
TGCACAAAATTTAGGGATAGATATAGATAGTTTAATTATATCTCAACCAGACCATGGTGAGCAAGCATTAGAAATTGCAG
ATAACTTAATTAGTTCTGGAGCTATAGATATTGTTGTAGTAGATTCAGTTGCAGCGTTAACACCAAAAAGTGAAATTGAA
GGTGAAATGGGAGATTCTAAAATGGGATTACACGCTCGTTTAATGTCTCAAGCACTTAGAAAATTAACAGGTACAATTCA
TAAAACAAACTGTACAGTTATATTTATTAACCAGTTACGTGAAAAAATTGGAGTAATGTTCGGTAATCCAGAAACTACAA
CAGGTGGTAACGCATTAAAGTTTTATGCTTCTGTTCGTTTAGATATTAGAAGAAGAACCCAAATTAAAGATGGTGATCGT
GTTATTGGAAATAGTACAAAGGTTAAAGTTGTAAAAAATAAAGTTGCACCACCTTTTCAAATTGCGGAATTTGATATTAT
GTACGGAAAAGGAATTTCTAAAACAGGTGAAATTTTAGATTTAGCTGTTGAATTTGGAATTGTTAAAAAAAGCGGATCGT
GGTTTAGTTATGGTGAAACAAAATTAGGACAAGGTAGAGATGCTGTTAAAGGACTTATATTTGACAACCCAGAATTAGCA
GAAGAATTAGAAATAAAAATTAAAGATTTTATTAATAATCAAGACGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.687

96.736

0.742
  recA Ralstonia pseudosolanacearum GMI1000

64.671

99.11

0.641
  recA Glaesserella parasuis strain SC1401

64.724

96.736

0.626
  recA Helicobacter pylori strain NCTC11637

62.315

100

0.623
  recA Acinetobacter baylyi ADP1

65.625

94.955

0.623
  recA Helicobacter pylori 26695

62.018

100

0.62
  recA Acinetobacter baumannii D1279779

65.312

94.955

0.62
  recA Neisseria gonorrhoeae MS11

62.614

97.626

0.611
  recA Neisseria gonorrhoeae MS11

62.614

97.626

0.611
  recA Neisseria gonorrhoeae strain FA1090

62.614

97.626

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.174

95.252

0.611
  recA Bacillus subtilis subsp. subtilis str. 168

64.038

94.065

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

61.585

97.329

0.599
  recA Pseudomonas stutzeri DSM 10701

62.696

94.659

0.593
  recA Streptococcus mitis NCTC 12261

60.923

96.439

0.588
  recA Streptococcus mitis SK321

60.923

96.439

0.588
  recA Streptococcus pyogenes NZ131

60.991

95.846

0.585
  recA Streptococcus pneumoniae R6

60.615

96.439

0.585
  recA Streptococcus pneumoniae D39

60.615

96.439

0.585
  recA Streptococcus pneumoniae TIGR4

60.615

96.439

0.585
  recA Streptococcus pneumoniae Rx1

60.615

96.439

0.585
  recA Vibrio cholerae strain A1552

60.123

96.736

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.123

96.736

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60

96.439

0.579
  recA Streptococcus mutans UA159

60.125

95.252

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.044

94.065

0.546