Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NY40_RS03845 Genome accession   NZ_AP014523
Coordinates   766336..767379 (+) Length   347 a.a.
NCBI ID   WP_000952109.1    Uniprot ID   A0A060Q0T2
Organism   Helicobacter pylori NY40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761336..772379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY40_RS03810 (NY40_0763) - 761405..761623 (+) 219 WP_001847091.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  NY40_RS03815 (NY40_0764) ccoP 761625..762503 (+) 879 WP_000346888.1 cytochrome-c oxidase, cbb3-type subunit III -
  NY40_RS03820 (NY40_0765) - 762514..762720 (+) 207 WP_000670506.1 DUF4006 family protein -
  NY40_RS03825 (NY40_0766) - 762821..763405 (+) 585 WP_041050544.1 hypothetical protein -
  NY40_RS03830 (NY40_0767) - 763418..763999 (+) 582 WP_041050546.1 hypothetical protein -
  NY40_RS03835 (NY40_0768) - 764610..765377 (+) 768 WP_041050548.1 hypothetical protein -
  NY40_RS03840 (NY40_0769) - 765374..766237 (-) 864 WP_041050550.1 menaquinone biosynthesis family protein -
  NY40_RS03845 (NY40_0770) recA 766336..767379 (+) 1044 WP_000952109.1 recombinase RecA Machinery gene
  NY40_RS03850 (NY40_0771) eno 767391..768671 (+) 1281 WP_041050553.1 phosphopyruvate hydratase -
  NY40_RS03855 (NY40_0772) - 768664..768939 (+) 276 WP_000146224.1 hypothetical protein -
  NY40_RS03860 (NY40_0773) - 768956..769552 (+) 597 WP_041050556.1 AMIN domain-containing protein -
  NY40_RS03865 (NY40_0774) - 769557..770045 (+) 489 WP_041050558.1 shikimate kinase -
  NY40_RS03870 (NY40_0775) - 770067..771023 (+) 957 WP_041050560.1 PDC sensor domain-containing protein -
  NY40_RS03875 (NY40_0776) - 771020..772123 (-) 1104 WP_041050563.1 glycosyltransferase family 8 protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37652.41 Da        Isoelectric Point: 5.5216

>NTDB_id=65789 NY40_RS03845 WP_000952109.1 766336..767379(+) (recA) [Helicobacter pylori NY40]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=65789 NY40_RS03845 WP_000952109.1 766336..767379(+) (recA) [Helicobacter pylori NY40]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGATTGGATTTAGCTTTAGGGA
TTGGAGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGCTTGCACATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAACATGCCCTAGACGTGTATTATGCTAAGAG
ACTGGGTGTGGATACGGAAAATTTACTCGTTTCCCAACCAAGCACAGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCGGTGGCAGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACTACGCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCTTTATTGAAAGAAGATAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGCATCGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060Q0T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

98.847

100

0.988
  recA Helicobacter pylori 26695

98.271

100

0.983
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.049

94.524

0.738
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae MS11

65.846

93.66

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.846

93.66

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

95.677

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

64.615

93.66

0.605
  recA Acinetobacter baumannii D1279779

63.609

94.236

0.599
  recA Acinetobacter baylyi ADP1

63.303

94.236

0.597
  recA Ralstonia pseudosolanacearum GMI1000

61.31

96.83

0.594
  recA Pseudomonas stutzeri DSM 10701

59.649

98.559

0.588
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.714

96.83

0.588
  recA Vibrio cholerae strain A1552

60.714

96.83

0.588
  recA Glaesserella parasuis strain SC1401

59.756

94.524

0.565
  recA Streptococcus pneumoniae Rx1

55.271

100

0.559
  recA Streptococcus pneumoniae D39

55.271

100

0.559
  recA Streptococcus pneumoniae R6

55.271

100

0.559
  recA Streptococcus pneumoniae TIGR4

55.271

100

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

54.062

100

0.556
  recA Streptococcus pyogenes NZ131

56.97

95.101

0.542
  recA Lactococcus lactis subsp. cremoris KW2

57.143

94.813

0.542
  recA Streptococcus mitis SK321

56.839

94.813

0.539
  recA Streptococcus mitis NCTC 12261

56.839

94.813

0.539
  recA Streptococcus mutans UA159

55.389

96.254

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.948

0.524

Multiple sequence alignment