Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H8S51_RS11390 Genome accession   NZ_CP092473
Coordinates   2395719..2396870 (-) Length   383 a.a.
NCBI ID   WP_186900444.1    Uniprot ID   -
Organism   Roseburia rectibacter strain NSJ-69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2390719..2401870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S51_RS11365 (H8S51_011365) - 2390733..2391287 (-) 555 WP_117919024.1 NUDIX hydrolase -
  H8S51_RS11370 (H8S51_011370) - 2391782..2392516 (-) 735 WP_117919026.1 response regulator transcription factor -
  H8S51_RS11375 (H8S51_011375) - 2392543..2393016 (-) 474 WP_186900443.1 hypothetical protein -
  H8S51_RS11380 (H8S51_011380) rny 2393344..2394882 (-) 1539 WP_006857696.1 ribonuclease Y -
  H8S51_RS11385 (H8S51_011385) - 2395092..2395715 (-) 624 WP_117919030.1 regulatory protein RecX -
  H8S51_RS11390 (H8S51_011390) recA 2395719..2396870 (-) 1152 WP_186900444.1 recombinase RecA Machinery gene
  H8S51_RS18290 - 2398188..2398574 (-) 387 WP_186900635.1 NAD(P)H-dependent oxidoreductase -
  H8S51_RS11405 (H8S51_011405) - 2398945..2399634 (-) 690 WP_334294414.1 LysR family transcriptional regulator -
  H8S51_RS11410 (H8S51_011410) - 2399716..2400486 (-) 771 WP_117922675.1 adenosylcobinamide-GDP ribazoletransferase -
  H8S51_RS11415 (H8S51_011415) - 2400506..2401222 (-) 717 WP_118208763.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41368.12 Da        Isoelectric Point: 4.9795

>NTDB_id=657871 H8S51_RS11390 WP_186900444.1 2395719..2396870(-) (recA) [Roseburia rectibacter strain NSJ-69]
MAKEDKYKEINAVKNDKLKALDAAISQIEKQYGKGSIMKLGDNSAHMNVETIPTGSLSLDIALGLGGLPKGRIIEIYGPE
SSGKTTVALHAVAEVQKRGGIAGFIDAEHALDPVYAKNIGVDIDNLYISQPDCGEQALEITETMVRSGAVDIVIVDSVAA
LVPKAEIDGDMGDSHVGLQARLMSQALRKLTSVISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYSSVRMDVRRI
EALKQGGEVVGNRTRVKIVKNKVAPPFREAEFDIMFGQGISREGDILDLAADKGVVNKSGAWYAYNGDKIGQGRENAKQY
LKDNPLICEEIEAKVREMLKVDGTEESEEAKENETEAQSIKAAEAIVKKAEAIEKAASSEAEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=657871 H8S51_RS11390 WP_186900444.1 2395719..2396870(-) (recA) [Roseburia rectibacter strain NSJ-69]
ATGGCAAAGGAAGATAAATATAAAGAGATCAATGCAGTAAAAAATGATAAACTAAAAGCATTAGATGCTGCAATTTCACA
GATTGAGAAGCAGTATGGCAAGGGATCTATAATGAAGCTCGGAGATAATTCCGCACATATGAATGTGGAGACGATCCCTA
CCGGTTCTTTAAGTCTTGATATTGCATTAGGTTTAGGCGGACTCCCGAAGGGAAGAATCATTGAGATCTATGGACCGGAG
TCTAGTGGTAAGACGACAGTTGCACTGCATGCGGTTGCAGAGGTACAGAAAAGAGGAGGCATTGCTGGATTCATTGACGC
AGAGCATGCCTTAGATCCGGTCTATGCAAAGAATATCGGCGTTGATATTGATAATTTGTACATATCACAGCCGGACTGCG
GAGAACAGGCACTTGAGATCACTGAGACCATGGTGCGTTCCGGTGCGGTAGATATTGTGATCGTTGACTCCGTGGCAGCA
CTTGTTCCAAAGGCAGAGATTGATGGAGATATGGGTGATTCACATGTAGGACTTCAGGCACGACTGATGAGCCAGGCACT
TCGTAAGCTGACTTCTGTTATCAGCAAGTCAAACTGTGTGGTTATCTTTATCAACCAGCTACGTGAAAAAGTAGGTGTAA
TGTTCGGTAACCCAGAGACAACGACCGGTGGACGTGCGTTAAAGTTTTATTCCTCTGTCCGTATGGATGTCAGAAGGATT
GAGGCATTAAAGCAGGGCGGGGAGGTTGTTGGAAACCGTACCAGAGTAAAGATCGTTAAGAATAAGGTGGCACCACCATT
CCGTGAAGCAGAGTTTGATATCATGTTTGGACAGGGTATTTCAAGAGAAGGTGATATCTTAGACCTTGCGGCAGATAAAG
GGGTTGTTAACAAGTCCGGAGCATGGTATGCATATAATGGAGATAAGATTGGCCAAGGACGTGAGAATGCAAAGCAGTAT
CTGAAAGATAACCCACTGATCTGTGAGGAGATTGAGGCAAAAGTCAGAGAGATGTTAAAGGTTGACGGAACCGAAGAATC
TGAAGAAGCAAAGGAAAACGAGACTGAGGCACAGAGTATAAAGGCTGCTGAAGCGATTGTAAAAAAAGCTGAGGCGATCG
AGAAGGCTGCGTCATCAGAAGCGGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.207

85.64

0.593
  recA Neisseria gonorrhoeae strain FA1090

63.401

90.601

0.574
  recA Neisseria gonorrhoeae MS11

63.401

90.601

0.574
  recA Neisseria gonorrhoeae MS11

63.401

90.601

0.574
  recA Streptococcus mutans UA159

62.147

92.428

0.574
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.593

84.595

0.572
  recA Vibrio cholerae strain A1552

67.593

84.595

0.572
  recA Streptococcus mitis NCTC 12261

62.824

90.601

0.569
  recA Streptococcus pneumoniae Rx1

63.265

89.556

0.567
  recA Streptococcus pneumoniae R6

63.265

89.556

0.567
  recA Streptococcus pneumoniae TIGR4

63.265

89.556

0.567
  recA Streptococcus pneumoniae D39

63.265

89.556

0.567
  recA Acinetobacter baylyi ADP1

63.158

89.295

0.564
  recA Streptococcus mitis SK321

63.343

89.034

0.564
  recA Acinetobacter baumannii D1279779

65.046

85.901

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

62.573

89.295

0.559
  recA Pseudomonas stutzeri DSM 10701

65.644

85.117

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.501

87.99

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.877

89.034

0.551
  recA Glaesserella parasuis strain SC1401

65.325

84.334

0.551
  recA Helicobacter pylori strain NCTC11637

64.22

85.379

0.548
  recA Ralstonia pseudosolanacearum GMI1000

66.561

81.984

0.546
  recA Helicobacter pylori 26695

63.914

85.379

0.546
  recA Streptococcus pyogenes NZ131

64.11

85.117

0.546
  recA Lactococcus lactis subsp. cremoris KW2

63.975

84.073

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.104

87.467

0.517