Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | I9P40_RS04760 | Genome accession | NZ_CP092442 |
| Coordinates | 1019795..1020859 (+) | Length | 354 a.a. |
| NCBI ID | WP_003037330.1 | Uniprot ID | - |
| Organism | Citrobacter portucalensis strain Sb-2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1012748..1079775 | 1019795..1020859 | within | 0 |
Gene organization within MGE regions
Location: 1012748..1079775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I9P40_RS04715 (I9P40_04080) | gutQ | 1012748..1013713 (-) | 966 | WP_003825938.1 | arabinose-5-phosphate isomerase GutQ | - |
| I9P40_RS04720 (I9P40_04075) | - | 1013706..1014479 (-) | 774 | WP_003037350.1 | DNA-binding transcriptional repressor | - |
| I9P40_RS04725 (I9P40_04070) | gutM | 1014550..1014909 (-) | 360 | WP_008785622.1 | transcriptional regulator GutM | - |
| I9P40_RS04730 (I9P40_04065) | srlD | 1014965..1015744 (-) | 780 | WP_003037345.1 | sorbitol-6-phosphate dehydrogenase | - |
| I9P40_RS04735 (I9P40_04060) | srlB | 1015762..1016124 (-) | 363 | WP_198801824.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| I9P40_RS04740 (I9P40_04055) | - | 1016138..1017109 (-) | 972 | WP_198801825.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| I9P40_RS04745 (I9P40_04050) | srlA | 1017106..1017669 (-) | 564 | WP_198801826.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| I9P40_RS04750 (I9P40_04045) | mltB | 1017934..1019013 (+) | 1080 | WP_003037336.1 | lytic murein transglycosylase B | - |
| I9P40_RS04755 (I9P40_04040) | pncC | 1019205..1019702 (+) | 498 | WP_048225249.1 | nicotinamide-nucleotide amidase | - |
| I9P40_RS04760 (I9P40_04035) | recA | 1019795..1020859 (+) | 1065 | WP_003037330.1 | recombinase RecA | Machinery gene |
| I9P40_RS04765 (I9P40_04030) | recX | 1020946..1021446 (+) | 501 | WP_048225248.1 | recombination regulator RecX | - |
| I9P40_RS04770 (I9P40_04025) | alaS | 1021575..1024202 (+) | 2628 | WP_198801827.1 | alanine--tRNA ligase | - |
| I9P40_RS04775 (I9P40_04020) | csrA | 1024441..1024626 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| I9P40_RS04805 (I9P40_03990) | yqaB | 1025962..1026528 (+) | 567 | WP_008785616.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| I9P40_RS04810 (I9P40_03985) | - | 1026525..1026953 (+) | 429 | WP_003825961.1 | YqaA family protein | - |
| I9P40_RS04815 (I9P40_03980) | gshA | 1027031..1028587 (+) | 1557 | WP_198801828.1 | glutamate--cysteine ligase | - |
| I9P40_RS04820 (I9P40_03975) | luxS | 1028737..1029252 (+) | 516 | WP_003037312.1 | S-ribosylhomocysteine lyase | - |
| I9P40_RS04825 (I9P40_03970) | - | 1029598..1030968 (+) | 1371 | WP_103286015.1 | carbohydrate porin | - |
| I9P40_RS04830 (I9P40_03965) | emrB | 1031017..1032555 (-) | 1539 | WP_003825966.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| I9P40_RS04835 (I9P40_03960) | emrA | 1032572..1033744 (-) | 1173 | WP_003825968.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| I9P40_RS04840 (I9P40_03955) | emrR | 1033874..1034404 (-) | 531 | WP_003037300.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| I9P40_RS04845 (I9P40_03950) | ygaH | 1034495..1034830 (-) | 336 | WP_198801829.1 | L-valine transporter subunit YgaH | - |
| I9P40_RS04850 (I9P40_03945) | - | 1034820..1035557 (-) | 738 | WP_003825971.1 | AzlC family ABC transporter permease | - |
| I9P40_RS04855 (I9P40_03940) | - | 1035680..1036864 (-) | 1185 | WP_071445458.1 | MFS transporter | - |
| I9P40_RS04860 (I9P40_03935) | proX | 1037055..1038050 (-) | 996 | WP_043017315.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| I9P40_RS04865 (I9P40_03930) | proW | 1038240..1039304 (-) | 1065 | WP_008785611.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| I9P40_RS04870 (I9P40_03925) | proV | 1039297..1040499 (-) | 1203 | WP_003825980.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| I9P40_RS04875 (I9P40_03920) | nrdF | 1040854..1041813 (-) | 960 | WP_198801830.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| I9P40_RS04880 (I9P40_03915) | nrdE | 1041824..1043968 (-) | 2145 | WP_198801831.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| I9P40_RS04885 (I9P40_03910) | nrdI | 1043941..1044351 (-) | 411 | WP_003825987.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| I9P40_RS04890 (I9P40_03905) | nrdH | 1044348..1044593 (-) | 246 | WP_048236625.1 | glutaredoxin-like protein NrdH | - |
| I9P40_RS04895 (I9P40_03900) | - | 1044874..1045305 (-) | 432 | WP_003825991.1 | carboxymuconolactone decarboxylase family protein | - |
| I9P40_RS04900 (I9P40_03895) | - | 1045396..1046730 (+) | 1335 | WP_100271986.1 | PLP-dependent aminotransferase family protein | - |
| I9P40_RS04905 (I9P40_03890) | - | 1046854..1047204 (+) | 351 | WP_003037262.1 | DUF2002 family protein | - |
| I9P40_RS04910 (I9P40_03885) | alaE | 1047241..1047690 (-) | 450 | WP_003037259.1 | L-alanine exporter AlaE | - |
| I9P40_RS04915 (I9P40_03880) | stpA | 1048248..1048649 (+) | 402 | WP_008785604.1 | DNA-binding protein StpA | - |
| I9P40_RS04920 (I9P40_03875) | - | 1048686..1048865 (-) | 180 | WP_003825999.1 | hypothetical protein | - |
| I9P40_RS04925 (I9P40_03870) | - | 1048956..1049483 (-) | 528 | WP_032944694.1 | rhodanese family protein | - |
| I9P40_RS04930 (I9P40_03865) | - | 1049493..1049792 (-) | 300 | WP_057067657.1 | helix-turn-helix transcriptional regulator | - |
| I9P40_RS04935 (I9P40_03860) | - | 1049976..1050134 (+) | 159 | WP_003037242.1 | YqaE/Pmp3 family membrane protein | - |
| I9P40_RS04940 (I9P40_03855) | lysM | 1050230..1050679 (+) | 450 | WP_003037241.1 | peptidoglycan-binding protein LysM | - |
| I9P40_RS04945 (I9P40_03850) | csiR | 1050692..1051378 (-) | 687 | WP_032944692.1 | DNA-binding transcriptional regulator CsiR | - |
| I9P40_RS04950 (I9P40_03845) | gabP | 1051424..1052824 (-) | 1401 | WP_032944690.1 | GABA permease | - |
| I9P40_RS04955 (I9P40_03840) | gabT | 1052972..1054255 (-) | 1284 | WP_008785600.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| I9P40_RS04960 (I9P40_03835) | gabD | 1054281..1055729 (-) | 1449 | WP_198801832.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| I9P40_RS04965 (I9P40_03830) | lhgO | 1055753..1057021 (-) | 1269 | WP_186413075.1 | L-2-hydroxyglutarate oxidase | - |
| I9P40_RS04970 (I9P40_03825) | glaH | 1057039..1058016 (-) | 978 | WP_003037221.1 | glutarate dioxygenase GlaH | - |
| I9P40_RS04975 (I9P40_03820) | - | 1058265..1058867 (-) | 603 | WP_008785596.1 | short chain dehydrogenase | - |
| I9P40_RS04980 (I9P40_03815) | - | 1058966..1059862 (+) | 897 | WP_198801833.1 | LysR family transcriptional regulator | - |
| I9P40_RS04985 (I9P40_03810) | - | 1059954..1061468 (-) | 1515 | WP_003826025.1 | tripartite tricarboxylate transporter permease | - |
| I9P40_RS04990 (I9P40_03805) | - | 1061479..1061913 (-) | 435 | WP_008321484.1 | tripartite tricarboxylate transporter TctB family protein | - |
| I9P40_RS04995 (I9P40_03800) | - | 1061928..1062905 (-) | 978 | WP_008785593.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| I9P40_RS05000 (I9P40_03795) | tctD | 1063059..1063733 (+) | 675 | WP_003826032.1 | transcriptional regulator TctD | - |
| I9P40_RS05005 (I9P40_03790) | - | 1063720..1065132 (+) | 1413 | WP_048225208.1 | sensor histidine kinase | - |
| I9P40_RS05010 (I9P40_03785) | - | 1065588..1067003 (+) | 1416 | WP_008785590.1 | undecaprenyl-phosphate glucose phosphotransferase | - |
| I9P40_RS05015 (I9P40_03780) | - | 1066993..1068279 (+) | 1287 | WP_103285672.1 | outer membrane beta-barrel protein | - |
| I9P40_RS05020 (I9P40_03775) | - | 1068281..1068838 (+) | 558 | WP_003826038.1 | polysaccharide biosynthesis/export family protein | - |
| I9P40_RS05025 (I9P40_03770) | - | 1068841..1070970 (+) | 2130 | WP_103285671.1 | tyrosine-protein kinase domain-containing protein | - |
| I9P40_RS05030 (I9P40_03765) | - | 1070967..1072178 (+) | 1212 | WP_198801834.1 | lipopolysaccharide biosynthesis protein | - |
| I9P40_RS05035 (I9P40_03760) | - | 1072175..1073545 (+) | 1371 | WP_008785587.1 | hypothetical protein | - |
| I9P40_RS05040 (I9P40_03755) | - | 1073550..1074539 (+) | 990 | WP_198801835.1 | glycosyltransferase family 2 protein | - |
| I9P40_RS05045 (I9P40_03750) | - | 1074554..1075765 (+) | 1212 | WP_198801836.1 | glycosyltransferase family 4 protein | - |
| I9P40_RS05050 (I9P40_03745) | - | 1075767..1076879 (+) | 1113 | WP_198801837.1 | glycosyltransferase family 4 protein | - |
| I9P40_RS05055 (I9P40_03740) | - | 1076882..1077289 (+) | 408 | WP_003826052.1 | hypothetical protein | - |
| I9P40_RS05060 (I9P40_03735) | - | 1077321..1078712 (+) | 1392 | WP_198801838.1 | DUF4832 domain-containing protein | - |
| I9P40_RS05065 (I9P40_03730) | galE | 1078759..1079775 (-) | 1017 | WP_198801839.1 | UDP-glucose 4-epimerase GalE | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38175.50 Da Isoelectric Point: 4.7535
>NTDB_id=657495 I9P40_RS04760 WP_003037330.1 1019795..1020859(+) (recA) [Citrobacter portucalensis strain Sb-2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDSGEDVKETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPATAKEI
EKKLRELLLNNQDSTPDFSVDDSGEDVKETNEDF
Nucleotide
Download Length: 1065 bp
>NTDB_id=657495 I9P40_RS04760 WP_003037330.1 1019795..1020859(+) (recA) [Citrobacter portucalensis strain Sb-2]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCTGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCCTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCCGCTGCACAGCGTGAAGGTAAAACCTGTGCATTTATCGATGCGGAACACGCGCTGGATCCGGTCTATGCCCGTAA
GCTTGGCGTTGATATCGACAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGTGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTTGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCGTCTGTTCGTCTGGATATCCGTCGTATTGGCGCGGTGAAAGAAGGCGACAACGTGGTCGGC
AGCGAAACCCGCGTTAAGGTTGTGAAAAACAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACTGCGAAAGAAATT
GAGAAGAAATTACGTGAGTTACTGCTCAATAACCAGGATTCAACGCCTGATTTCTCCGTTGATGACAGCGGCGAAGACGT
AAAAGAAACGAACGAAGATTTCTGA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCTGCAGCGCTGGGTCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCCATGGATGTGGAAACTATCTCCACTGGTTCGCTTTCTCTGGATATCGCATTGGGCG
CGGGCGGTTTGCCAATGGGCCGTATCGTCGAAATCTACGGGCCTGAATCCTCCGGTAAAACAACGCTGACCCTGCAGGTT
ATTGCCGCTGCACAGCGTGAAGGTAAAACCTGTGCATTTATCGATGCGGAACACGCGCTGGATCCGGTCTATGCCCGTAA
GCTTGGCGTTGATATCGACAACCTGCTGTGTTCTCAGCCGGATACCGGTGAACAAGCGCTGGAAATCTGTGATGCGCTGG
CGCGCTCCGGTGCGGTTGACGTTATCGTTGTCGACTCCGTTGCCGCATTGACGCCGAAGGCAGAAATCGAAGGTGAGATT
GGCGACTCTCACATGGGCCTTGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTTATGTTTGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAATTCTATGCGTCTGTTCGTCTGGATATCCGTCGTATTGGCGCGGTGAAAGAAGGCGACAACGTGGTCGGC
AGCGAAACCCGCGTTAAGGTTGTGAAAAACAAAATTGCAGCGCCGTTCAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAACGGTGAGAAAATCGGTCAGGGTAAAGCGAATGCGACCAACTGGCTGAAAGAAAACCCGGCAACTGCGAAAGAAATT
GAGAAGAAATTACGTGAGTTACTGCTCAATAACCAGGATTCAACGCCTGATTTCTCCGTTGATGACAGCGGCGAAGACGT
AAAAGAAACGAACGAAGATTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.