NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OHU26_RS22110	Genome accession	NZ_CP108249
Coordinates	4907152..4907823 (+)	Length	223 a.a.
NCBI ID	WP_323179072.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00069
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4902152..4912823

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHU26_RS22075 (OHU26_22025)	-	4902826..4903026 (+)	201	WP_327362771.1	excisionase family DNA-binding protein	-
OHU26_RS22080	-	4903026..4903949 (+)	924	WP_405706683.1	tyrosine-type recombinase/integrase	-
OHU26_RS22085	-	4903846..4904193 (+)	348	WP_405706460.1	tyrosine-type recombinase/integrase	-
OHU26_RS22100 (OHU26_22050)	tig	4904721..4906124 (+)	1404	WP_266629262.1	trigger factor	-
OHU26_RS22105 (OHU26_22055)	clpP	4906448..4907065 (+)	618	WP_266629264.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU26_RS22110 (OHU26_22060)	clpP	4907152..4907823 (+)	672	WP_323179072.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OHU26_RS22115 (OHU26_22065)	clpX	4907977..4909263 (+)	1287	WP_030159377.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OHU26_RS22120 (OHU26_22070)	-	4909377..4909589 (+)	213	WP_405702962.1	hypothetical protein	-
OHU26_RS22125 (OHU26_22075)	-	4909645..4910574 (-)	930	WP_266629271.1	hypothetical protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24586.05 Da Isoelectric Point: 4.9265

                                >NTDB_id=657332 OHU26_RS22110 WP_323179072.1 4907152..4907823(+) (clpP) [Streptomyces sp. NBC_00069]

MVNTQMHMNNLSPASGLYTGAPVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD

PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAAREILRMRDQLETMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIVSTRKNSH

Nucleotide

Download Length: 672 bp

                                >NTDB_id=657332 OHU26_RS22110 WP_323179072.1 4907152..4907823(+) (clpP) [Streptomyces sp. NBC_00069]

ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCACCGGTGGACAACCGCTA

CGTCGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG

TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTGGCCGCCGGCACCC

CCGGCAAGCGCATGGCGCTGCCGAACGCCCGTGTGCTGATCCACCAGCCGTCGGGCGGCACCGGCCGCGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAGGGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACCACGCC

GATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCGCTCGCGTACGGCCTGATCGACC

AGATCGTCTCGACCCGCAAGAACTCCCACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.632	85.202	0.448
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	49.468	84.305	0.417
clpP	Streptococcus thermophilus LMD-9	45.876	86.996	0.399
clpP	Streptococcus pyogenes JRS4	45.876	86.996	0.399
clpP	Streptococcus pyogenes MGAS315	45.876	86.996	0.399
clpP	Streptococcus thermophilus LMG 18311	45.876	86.996	0.399
clpP	Streptococcus mutans UA159	46.316	85.202	0.395
clpP	Lactococcus lactis subsp. cremoris KW2	46.073	85.65	0.395
clpP	Streptococcus pneumoniae D39	45.55	85.65	0.39
clpP	Streptococcus pneumoniae TIGR4	45.55	85.65	0.39
clpP	Streptococcus pneumoniae R6	45.55	85.65	0.39
clpP	Streptococcus pneumoniae Rx1	45.55	85.65	0.39
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	45.026	85.65	0.386

Detailed information NTG0657332