Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MJO52_RS15310 Genome accession   NZ_CP092418
Coordinates   3450041..3451075 (-) Length   344 a.a.
NCBI ID   WP_252082775.1    Uniprot ID   -
Organism   Microbulbifer variabilis strain SCSIO 43006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3445041..3456075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO52_RS15280 (MJO52_15275) - 3445353..3445700 (-) 348 WP_252082765.1 histidine triad nucleotide-binding protein -
  MJO52_RS15285 (MJO52_15280) - 3445705..3445890 (-) 186 WP_152452364.1 Trm112 family protein -
  MJO52_RS15290 (MJO52_15285) - 3446026..3446862 (-) 837 WP_252082767.1 alpha/beta hydrolase -
  MJO52_RS15295 (MJO52_15290) - 3446909..3447928 (-) 1020 WP_252082769.1 class I fructose-bisphosphate aldolase -
  MJO52_RS15300 (MJO52_15295) glpK 3447976..3449454 (-) 1479 WP_252082771.1 glycerol kinase GlpK -
  MJO52_RS15305 (MJO52_15300) - 3449552..3450040 (-) 489 WP_252082773.1 regulatory protein RecX -
  MJO52_RS15310 (MJO52_15305) recA 3450041..3451075 (-) 1035 WP_252082775.1 recombinase RecA Machinery gene
  MJO52_RS15315 (MJO52_15310) - 3451250..3451765 (-) 516 WP_252082777.1 CinA family protein -
  MJO52_RS15320 (MJO52_15315) - 3452279..3454360 (+) 2082 WP_252082778.1 glycoside hydrolase family 16 protein -
  MJO52_RS15325 (MJO52_15320) - 3454663..3455097 (-) 435 WP_252082780.1 GNAT family N-acetyltransferase -
  MJO52_RS15330 (MJO52_15325) - 3455126..3455734 (+) 609 WP_252082781.1 tRNA-uridine aminocarboxypropyltransferase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37055.38 Da        Isoelectric Point: 5.1760

>NTDB_id=657332 MJO52_RS15310 WP_252082775.1 3450041..3451075(-) (recA) [Microbulbifer variabilis strain SCSIO 43006]
MDSNKDKALKAALSQIERQFGKGTVMRMGDKERERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLAIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINMIGEVVDYGVKLGLVDKAGAWYSYKGDKIGQGKANATKFLRDNPDIRNEIEA
QLRAQLLGDLVPASPEEAAELPQE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=657332 MJO52_RS15310 WP_252082775.1 3450041..3451075(-) (recA) [Microbulbifer variabilis strain SCSIO 43006]
ATGGATTCCAATAAAGACAAGGCATTGAAAGCGGCGCTGTCGCAGATCGAACGCCAGTTTGGCAAGGGCACAGTGATGCG
TATGGGGGATAAGGAGCGCGAGCGTATCCCCGCAATCTCCACTGGCTCTCTCGGCCTGGATGTGGCGCTGGGGATAGGCG
GCCTGCCCCGCGGCCGTATCGTTGAGATCTATGGCCCGGAATCCTCTGGTAAAACCACTCTGACCCTGCAAGTGATCGCC
GAGGCCCAGCGCAAAGGCGGTACCTGTGCTTTCGTGGATGCAGAACACGCCCTAGATCCCATTTATGCCGAGAAGCTCGG
TGTAAATGTTGATGAGTTGATCGTCTCCCAGCCAGATACCGGCGAGCAGGCCTTGGAAGTGGCAGATATGCTGGTGCGTT
CCGGTGCTGTGGATGTATTGGTTGTGGACTCCGTTGCAGCCTTGACACCGCGCGCTGAAATTGAAGGAGAGATGGGAGAT
TCCCACGTAGGTTTGCAGGCTCGTCTGATGTCCCAGGCACTGCGTAAGTTGACCGGCAATATCAAGAACACCAATACCTT
AGCGATCTTTATCAACCAGATTCGTATGAAGATCGGTGTAATGTTCGGCTCCCCGGAAACCACTACCGGTGGTAATGCTC
TTAAGTTCTACTCCTCCGTGCGTTTGGATATCCGTCGCATCGGCTCGGTAAAAGATGGCGATGAAGTAGTGGGTAACGAG
ACCCGCGTGAAAGTGGTGAAGAACAAGGTGGCTCCGCCCTTTAAACAGACTGAATTTCAGATCATGTACGGCGAAGGCAT
CAATATGATTGGTGAGGTTGTCGACTACGGTGTGAAGCTGGGCTTGGTTGATAAGGCGGGCGCTTGGTATAGCTACAAGG
GTGATAAGATTGGTCAGGGTAAGGCCAATGCTACCAAGTTCCTGCGTGATAACCCCGATATCCGCAATGAAATTGAGGCT
CAGCTGCGCGCACAGCTGTTAGGCGATCTGGTTCCGGCCAGCCCTGAAGAGGCTGCCGAACTGCCCCAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.122

95.058

0.762
  recA Acinetobacter baylyi ADP1

72.647

98.837

0.718
  recA Acinetobacter baumannii D1279779

73.7

95.058

0.701
  recA Vibrio cholerae strain A1552

73.089

95.058

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

95.058

0.695
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.308

94.477

0.683
  recA Glaesserella parasuis strain SC1401

71.118

93.605

0.666
  recA Ralstonia pseudosolanacearum GMI1000

72.99

90.407

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.055

95.058

0.628
  recA Helicobacter pylori 26695

61.449

100

0.616
  recA Helicobacter pylori strain NCTC11637

61.449

100

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

93.314

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

96.221

0.61
  recA Streptococcus mutans UA159

62.154

94.477

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

63.125

93.023

0.587
  recA Streptococcus mitis NCTC 12261

61.28

95.349

0.584
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.494

94.186

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.443

93.895

0.558
  recA Lactococcus lactis subsp. cremoris KW2

57.927

95.349

0.552