Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MJO57_RS11925 Genome accession   NZ_CP092417
Coordinates   2735164..2736261 (+) Length   365 a.a.
NCBI ID   WP_252025545.1    Uniprot ID   -
Organism   Endozoicomonas sp. SCSIO W0465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2730164..2741261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJO57_RS11895 (MJO57_11840) - 2730491..2730976 (-) 486 WP_252025535.1 hypothetical protein -
  MJO57_RS11900 (MJO57_11845) - 2731153..2731779 (+) 627 WP_252025536.1 DUF2796 domain-containing protein -
  MJO57_RS11905 (MJO57_11850) - 2731781..2732533 (+) 753 WP_252025538.1 ABC transporter ATP-binding protein -
  MJO57_RS11910 (MJO57_11855) - 2732533..2733795 (+) 1263 WP_252025540.1 FtsX-like permease family protein -
  MJO57_RS11915 (MJO57_11860) - 2733837..2734376 (+) 540 WP_252025542.1 DUF3299 domain-containing protein -
  MJO57_RS11920 (MJO57_11865) - 2734549..2735043 (+) 495 WP_252025543.1 CinA family protein -
  MJO57_RS11925 (MJO57_11870) recA 2735164..2736261 (+) 1098 WP_252025545.1 recombinase RecA Machinery gene
  MJO57_RS33245 - 2736314..2736706 (+) 393 WP_371924876.1 regulatory protein RecX -
  MJO57_RS11935 (MJO57_11880) - 2736792..2738306 (+) 1515 WP_252017330.1 IS66 family transposase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39149.64 Da        Isoelectric Point: 5.3394

>NTDB_id=657291 MJO57_RS11925 WP_252025545.1 2735164..2736261(+) (recA) [Endozoicomonas sp. SCSIO W0465]
MDDNRKKALAAALGQIDRQFGKGAIMRMGDQKQEAIPAISTGSLQLDIALGIGGLPKGRVIEIFGPESSGKTTLTLSVIA
QAQKQGATCAFVDAEHALDPQYAGKLGVNVDDLYVSQPDTGEQALEITDMLVRSGAVDVIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGSIKQTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKQGDEVIGNE
TRVKVVKNKVSPPFRQAEFQILYGQGIYHMGEVIDLGVKQKLVDKSGAWYAYKGAKIGQGKANAAQYLSDNPEVAAEIEA
QIRDELMSTPEKEAAKKAEAEARRDAGKKDDADAASVQQDELLAE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=657291 MJO57_RS11925 WP_252025545.1 2735164..2736261(+) (recA) [Endozoicomonas sp. SCSIO W0465]
ATGGATGATAACAGAAAAAAAGCGTTGGCAGCAGCACTTGGCCAGATTGACCGACAGTTTGGTAAAGGTGCCATCATGCG
GATGGGCGATCAGAAGCAGGAGGCAATTCCTGCAATTTCTACCGGCTCTCTGCAGCTGGATATTGCGCTGGGTATTGGCG
GTCTGCCGAAGGGGCGTGTTATTGAAATCTTCGGGCCTGAATCTTCCGGTAAAACCACGCTGACCTTGAGCGTTATTGCC
CAGGCGCAGAAGCAGGGTGCTACCTGTGCCTTCGTTGATGCGGAACATGCCCTGGATCCTCAGTACGCCGGTAAGCTGGG
TGTGAATGTGGATGACCTGTATGTCTCTCAGCCGGATACCGGTGAGCAGGCGCTGGAAATTACTGACATGCTGGTTCGTT
CCGGTGCCGTGGATGTCATCGTTGTTGACTCTGTAGCTGCCCTGGTACCCAAGGCGGAAATTGAAGGTGAGATGGGGGAT
TCTCACGTTGGCTTGCAGGCCCGCCTGATGTCTCAGGCTCTGCGTAAGCTGACGGGATCCATCAAACAGACCAACTGCAT
GGTGATCTTTATCAACCAGATCCGGATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACTACCGGTGGTAACGCAC
TGAAATTCTATTCGTCTGTACGTCTTGATATCCGTCGTACTGGTGCCGTGAAGCAGGGTGATGAGGTTATTGGTAACGAA
ACCCGGGTTAAGGTTGTGAAGAATAAGGTGTCGCCTCCTTTCCGTCAGGCTGAATTCCAGATTCTTTATGGCCAGGGTAT
CTACCATATGGGTGAAGTGATTGATCTGGGTGTGAAGCAGAAACTGGTTGATAAATCCGGTGCCTGGTATGCCTACAAAG
GGGCAAAGATTGGCCAGGGTAAAGCCAATGCTGCTCAATATCTCTCTGATAACCCGGAAGTGGCAGCTGAAATCGAGGCG
CAGATCCGTGATGAGTTGATGAGCACACCAGAGAAAGAAGCAGCCAAAAAGGCGGAAGCAGAAGCCAGGAGAGATGCCGG
TAAAAAAGATGATGCTGATGCGGCAAGTGTGCAACAGGACGAGCTGCTGGCTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

83.587

90.137

0.753
  recA Vibrio cholerae strain A1552

74.018

90.685

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.018

90.685

0.671
  recA Acinetobacter baylyi ADP1

71.014

94.521

0.671
  recA Neisseria gonorrhoeae strain FA1090

74.074

88.767

0.658
  recA Neisseria gonorrhoeae MS11

74.074

88.767

0.658
  recA Neisseria gonorrhoeae MS11

74.074

88.767

0.658
  recA Glaesserella parasuis strain SC1401

66.111

98.63

0.652
  recA Acinetobacter baumannii D1279779

72.34

90.137

0.652
  recA Ralstonia pseudosolanacearum GMI1000

72.381

86.301

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.667

89.589

0.597
  recA Helicobacter pylori strain NCTC11637

62.349

90.959

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

90.685

0.564
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

88.219

0.562
  recA Helicobacter pylori 26695

61.747

90.959

0.562
  recA Streptococcus mitis SK321

59.238

93.425

0.553
  recA Streptococcus mitis NCTC 12261

59.064

93.699

0.553
  recA Streptococcus mutans UA159

57.386

96.438

0.553
  recA Streptococcus pneumoniae Rx1

56.534

96.438

0.545
  recA Streptococcus pneumoniae D39

56.534

96.438

0.545
  recA Streptococcus pneumoniae R6

56.534

96.438

0.545
  recA Streptococcus pneumoniae TIGR4

56.534

96.438

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

61.371

87.945

0.54
  recA Streptococcus pyogenes NZ131

60

89.041

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

89.041

0.507
  recA Lactococcus lactis subsp. cremoris KW2

56.656

88.493

0.501