Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MC269_RS04035 Genome accession   NZ_CP092373
Coordinates   842084..843157 (+) Length   357 a.a.
NCBI ID   WP_081140966.1    Uniprot ID   A0A1V9DCQ4
Organism   Pantoea sp. Z09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837084..848157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC269_RS04010 mltB 838070..839152 (+) 1083 WP_081140961.1 lytic murein transglycosylase B -
  MC269_RS04015 - 839230..839568 (+) 339 WP_239954097.1 zinc ribbon domain-containing protein YjdM -
  MC269_RS04020 - 839584..840471 (-) 888 WP_239954100.1 dihydrodipicolinate synthase family protein -
  MC269_RS04025 tam 840615..841385 (+) 771 WP_239954102.1 trans-aconitate 2-methyltransferase -
  MC269_RS04030 pncC 841494..841988 (+) 495 WP_239954104.1 nicotinamide-nucleotide amidase -
  MC269_RS04035 recA 842084..843157 (+) 1074 WP_081140966.1 recombinase RecA Machinery gene
  MC269_RS04040 - 843269..843781 (+) 513 WP_081140967.1 regulatory protein RecX -
  MC269_RS04045 alaS 843918..846545 (+) 2628 WP_239954105.1 alanine--tRNA ligase -
  MC269_RS04050 csrA 846795..846980 (+) 186 WP_004155916.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37945.40 Da        Isoelectric Point: 4.8582

>NTDB_id=656903 MC269_RS04035 WP_081140966.1 842084..843157(+) (recA) [Pantoea sp. Z09]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKYKLVEKAGAWYSYNGDKIGQGKANATNFLKENPAIANEL
DVKLRDMLLNSANAEAGAAEAPAGALENAASESNEDF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=656903 MC269_RS04035 WP_081140966.1 842084..843157(+) (recA) [Pantoea sp. Z09]
ATGGCAATTGACGAGAACAAACAGAAGGCTTTAGCTGCTGCGCTGGGCCAGATTGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGCTCAATGGACGTGGAAACCATTTCTACCGGTTCGCTTTCACTGGATATCGCACTGGGCG
CCGGCGGTTTGCCGATGGGCCGTATCGTCGAAATTTATGGTCCGGAATCATCCGGTAAAACCACGCTGACGCTGCAGGTT
ATCGCTGCGGCGCAGCGCAAAGGCAAAACCTGCGCCTTTATCGATGCTGAACACGCGCTGGATCCGGTTTACGCCAAAAA
GCTTGGCGTCGACATCGACAATCTGCTTTGTTCGCAGCCGGACACCGGTGAGCAGGCACTGGAAATCTGTGACGCGCTGG
CGCGTTCAGGCGCAGTGGACGTTATTATCGTCGACTCCGTCGCGGCGCTGACGCCGAAAGCAGAAATCGAAGGCGAAATC
GGTGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCAGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCGCTGAAGTTCTATGCCTCTGTCCGTCTTGATATTCGTCGTATCGGCGCAATCAAAGAGGGCGACGAAGTCGTCGGC
AGCGAGACCCGCGTAAAAGTGGTGAAAAACAAAATCGCTGCGCCGTTTAAGCAGGCGGAGTTCCAGATCATGTACGGCGA
AGGCATCAACACCTTTGGCGAACTGGTCGACCTGGGCGTGAAGTACAAGCTGGTGGAAAAAGCGGGCGCCTGGTACAGCT
ACAACGGCGATAAGATCGGTCAGGGTAAAGCGAACGCCACCAATTTCCTGAAGGAAAACCCGGCGATCGCCAACGAACTG
GACGTGAAGCTGCGTGACATGCTGCTGAACAGCGCCAACGCTGAAGCGGGCGCCGCGGAAGCGCCAGCCGGCGCGCTGGA
AAATGCAGCCAGCGAAAGCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9DCQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.186

93.277

0.804
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.186

93.277

0.804
  recA Pseudomonas stutzeri DSM 10701

74.627

93.838

0.7
  recA Acinetobacter baylyi ADP1

71.598

94.678

0.678
  recA Glaesserella parasuis strain SC1401

68.75

98.599

0.678
  recA Acinetobacter baumannii D1279779

73.252

92.157

0.675
  recA Neisseria gonorrhoeae MS11

68.827

90.756

0.625
  recA Neisseria gonorrhoeae MS11

68.827

90.756

0.625
  recA Neisseria gonorrhoeae strain FA1090

68.827

90.756

0.625
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Helicobacter pylori strain NCTC11637

62.691

91.597

0.574
  recA Helicobacter pylori 26695

62.385

91.597

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

89.356

0.569
  recA Streptococcus pneumoniae TIGR4

62.539

90.476

0.566
  recA Streptococcus pneumoniae Rx1

62.539

90.476

0.566
  recA Streptococcus pneumoniae D39

62.539

90.476

0.566
  recA Streptococcus pneumoniae R6

62.539

90.476

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

89.916

0.566
  recA Streptococcus mitis NCTC 12261

62.229

90.476

0.563
  recA Streptococcus mutans UA159

61.846

91.036

0.563
  recA Streptococcus mitis SK321

61.92

90.476

0.56
  recA Streptococcus pyogenes NZ131

61.538

91.036

0.56
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.476

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

92.997

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

91.036

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.308

92.717

0.541