Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU34_RS40370 Genome accession   NZ_CP108235
Coordinates   9033800..9034471 (+) Length   223 a.a.
NCBI ID   WP_142268523.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00080     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9028800..9039471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU34_RS40345 (OHU34_40325) - 9029283..9029705 (+) 423 WP_142268526.1 VOC family protein -
  OHU34_RS40350 (OHU34_40330) - 9029778..9031598 (-) 1821 WP_405771241.1 serine/threonine-protein kinase -
  OHU34_RS40355 (OHU34_40335) - 9031935..9032912 (-) 978 WP_142268524.1 zinc-binding dehydrogenase -
  OHU34_RS40360 (OHU34_40340) - 9033051..9033404 (+) 354 WP_020127220.1 helix-turn-helix transcriptional regulator -
  OHU34_RS40365 (OHU34_40345) - 9033453..9033623 (+) 171 WP_405771244.1 hypothetical protein -
  OHU34_RS40370 (OHU34_40350) dinR/lexA 9033800..9034471 (+) 672 WP_142268523.1 transcriptional repressor LexA Regulator
  OHU34_RS40375 (OHU34_40355) - 9034790..9036349 (-) 1560 WP_405771247.1 mucoidy inhibitor MuiA family protein -
  OHU34_RS40380 (OHU34_40360) - 9036358..9038508 (-) 2151 WP_405771250.1 DUF4139 domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24307.60 Da        Isoelectric Point: 5.4165

>NTDB_id=656894 OHU34_RS40370 WP_142268523.1 9033800..9034471(+) (dinR/lexA) [Streptomyces sp. NBC_00080]
MENTASARRGRPPGPRTAEGELTNRQSAIVRYITESVERQGYPPSMREIGQAVELASTSSVAHQLMALERKGVLYRDPQR
PRAYRVRPSWAPDLGGRSETRVDVPLVGRIAAGAPLLAEEMVEDVYALPRQVVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDVVAALLDDEATVKVLRRQDGQVWLMPRNPAYTPIRGDEAQILGKVVGVLRVL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=656894 OHU34_RS40370 WP_142268523.1 9033800..9034471(+) (dinR/lexA) [Streptomyces sp. NBC_00080]
ATGGAGAACACCGCGTCCGCCCGCCGGGGGCGTCCCCCGGGGCCCCGGACCGCCGAAGGAGAGCTGACGAACCGCCAGTC
GGCCATCGTCCGCTACATCACGGAGTCGGTCGAACGGCAGGGCTACCCGCCCTCCATGCGGGAGATCGGCCAGGCCGTGG
AGCTCGCCAGCACGTCCTCGGTCGCTCATCAGCTGATGGCCCTCGAACGCAAGGGCGTGCTCTACCGGGATCCGCAACGC
CCCCGCGCGTACCGGGTCCGGCCCTCATGGGCGCCCGACCTGGGCGGCAGGAGCGAGACACGGGTGGATGTGCCGCTCGT
CGGGCGGATCGCCGCCGGCGCCCCGCTGCTCGCCGAGGAGATGGTCGAGGACGTCTACGCCCTGCCCCGCCAAGTCGTGG
GCGACGGCGACCTGTTCGCCCTGACGGTCTCCGGCGATTCCATGATCGACGCGGCGATCTGCGACGGCGACATCGTGACC
GTACGGCGCCAGGACAGCGCCGATCACGGAGACGTCGTCGCCGCGCTCCTGGACGACGAGGCCACCGTCAAGGTGCTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAACCCGGCCTACACGCCGATCCGCGGCGACGAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCGTGCTCTAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.902

91.928

0.404