Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MG290_RS09135 Genome accession   NZ_CP092370
Coordinates   1837676..1838683 (+) Length   335 a.a.
NCBI ID   WP_264561008.1    Uniprot ID   -
Organism   Flavobacterium sp. CBA20B-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832676..1843683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MG290_RS09110 (MG290_09085) - 1833058..1833414 (-) 357 WP_264561003.1 ArsC/Spx/MgsR family protein -
  MG290_RS09115 (MG290_09090) - 1833542..1834906 (-) 1365 WP_264561004.1 rhodanese-related sulfurtransferase -
  MG290_RS09120 (MG290_09095) - 1835032..1835487 (-) 456 WP_264561005.1 hypothetical protein -
  MG290_RS09125 (MG290_09100) - 1835529..1836590 (-) 1062 WP_264561006.1 L,D-transpeptidase -
  MG290_RS09130 (MG290_09105) - 1836660..1837541 (-) 882 WP_264561007.1 L,D-transpeptidase -
  MG290_RS09135 (MG290_09110) recA 1837676..1838683 (+) 1008 WP_264561008.1 recombinase RecA Machinery gene
  MG290_RS09140 (MG290_09115) - 1838720..1839274 (-) 555 WP_264561009.1 zinc ribbon domain-containing protein -
  MG290_RS09145 (MG290_09120) pnuC 1839473..1840063 (+) 591 WP_264561010.1 nicotinamide riboside transporter PnuC -
  MG290_RS09150 (MG290_09125) - 1840056..1841063 (+) 1008 WP_264561011.1 hypothetical protein -
  MG290_RS09155 (MG290_09130) - 1841464..1841775 (+) 312 WP_264561012.1 hypothetical protein -
  MG290_RS09160 (MG290_09135) - 1841784..1842302 (+) 519 WP_264561013.1 hypothetical protein -
  MG290_RS09165 (MG290_09140) - 1842530..1843147 (-) 618 WP_264561014.1 murein L,D-transpeptidase catalytic domain family protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36465.75 Da        Isoelectric Point: 5.5387

>NTDB_id=656894 MG290_RS09135 WP_264561008.1 1837676..1838683(+) (recA) [Flavobacterium sp. CBA20B-1]
MSADKEAKLKALQLTLDKLDKTYGKGTVMKLGDSAVEEVDAIPSGSLGLDLALGVMGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQPDNGEQALEIAENLIRSGAIDLVVIDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTATISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRKSTQIKDGDNVM
GNRTKVKIIKNKVAPPFRTAEFDIMYGEGISKTGEILDLAVDFEIVKKSGSWFSYGDTKLGQGRDAVKGLIKDNPELQEE
LEERIKQHIKEQQNA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=656894 MG290_RS09135 WP_264561008.1 1837676..1838683(+) (recA) [Flavobacterium sp. CBA20B-1]
ATGAGTGCAGATAAAGAAGCAAAATTAAAGGCTTTACAATTAACATTAGATAAATTAGACAAAACATACGGCAAGGGCAC
CGTAATGAAATTGGGCGATAGTGCAGTGGAAGAGGTAGATGCTATTCCATCGGGTTCATTAGGGTTAGATTTGGCTTTGG
GAGTAATGGGGTATCCGCGTGGAAGGATTATTGAAATCTACGGTCCTGAATCGTCTGGTAAAACCACTTTAACATTACAT
GCCATTGCAGAAGCACAAAAAGCTGGTGGAATTGCCGCTTTTATTGATGCTGAACATGCTTTTGATCGTTTTTATGCGCA
GAAATTGGGGGTAGATATTGATAATTTGATTATTTCACAACCCGACAATGGGGAACAAGCGCTAGAAATTGCCGAAAACT
TGATTCGTTCAGGTGCAATTGATTTAGTAGTTATTGACTCGGTTGCTGCATTGACACCAAAAAGCGAAATTGAAGGCGAA
ATGGGCGATTCTAAAATGGGACTACACGCACGTTTAATGTCGCAAGCCTTGCGAAAGTTAACCGCTACTATTTCAAAAAC
AAATTGTACGGTATTTTTTATTAACCAGTTGCGTGAAAAAATTGGGGTGATGTTTGGAAACCCAGAAACCACCACAGGTG
GTAATGCTTTGAAGTTCTACGCATCGGTTCGTTTAGATATTCGCAAATCAACCCAAATTAAAGACGGCGACAACGTAATG
GGGAACCGTACAAAGGTTAAAATCATTAAAAACAAAGTGGCACCACCGTTCCGCACCGCTGAATTTGACATTATGTATGG
CGAAGGAATATCAAAAACAGGTGAAATTTTAGATTTAGCTGTTGATTTTGAAATCGTTAAAAAGTCAGGATCATGGTTTA
GCTATGGCGATACCAAATTAGGTCAGGGTCGCGATGCGGTGAAAGGTCTCATTAAAGATAACCCGGAACTTCAGGAAGAA
TTAGAAGAGCGTATTAAACAACACATTAAAGAACAGCAAAATGCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.292

98.209

0.749
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.015

96.418

0.627
  recA Acinetobacter baumannii D1279779

64.506

96.716

0.624
  recA Neisseria gonorrhoeae MS11

63.914

97.612

0.624
  recA Neisseria gonorrhoeae MS11

63.914

97.612

0.624
  recA Neisseria gonorrhoeae strain FA1090

63.914

97.612

0.624
  recA Glaesserella parasuis strain SC1401

62.651

99.104

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

63.804

97.313

0.621
  recA Helicobacter pylori strain NCTC11637

64

97.015

0.621
  recA Acinetobacter baylyi ADP1

64.596

96.119

0.621
  recA Helicobacter pylori 26695

63.692

97.015

0.618
  recA Ralstonia pseudosolanacearum GMI1000

65.916

92.836

0.612
  recA Streptococcus mitis NCTC 12261

62.617

95.821

0.6
  recA Streptococcus mitis SK321

62.617

95.821

0.6
  recA Streptococcus pneumoniae Rx1

61.994

95.821

0.594
  recA Streptococcus pneumoniae R6

61.994

95.821

0.594
  recA Streptococcus pneumoniae D39

61.994

95.821

0.594
  recA Streptococcus pneumoniae TIGR4

61.994

95.821

0.594
  recA Streptococcus pyogenes NZ131

60.991

96.418

0.588
  recA Lactococcus lactis subsp. cremoris KW2

61.371

95.821

0.588
  recA Pseudomonas stutzeri DSM 10701

59.568

96.716

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.359

98.209

0.573
  recA Vibrio cholerae strain A1552

58.359

98.209

0.573
  recA Streptococcus mutans UA159

59.813

95.821

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.232

97.91

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

58.696

96.119

0.564