Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KJS94_RS15655 Genome accession   NZ_CP092334
Coordinates   3692179..3693180 (+) Length   333 a.a.
NCBI ID   WP_214448496.1    Uniprot ID   -
Organism   Flavihumibacter rivuli strain IMCC34838     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3687179..3698180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS94_RS15630 (KJS94_15630) - 3687386..3688483 (+) 1098 WP_214448501.1 glycoside hydrolase family 18 protein -
  KJS94_RS15635 (KJS94_15635) - 3688552..3689421 (-) 870 WP_214448500.1 OmpA family protein -
  KJS94_RS15640 (KJS94_15640) - 3689608..3690177 (-) 570 WP_214448499.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KJS94_RS15645 (KJS94_15645) - 3690266..3691357 (-) 1092 WP_214448498.1 copper resistance protein NlpE N-terminal domain-containing protein -
  KJS94_RS15650 (KJS94_15650) - 3691492..3691956 (-) 465 WP_214448497.1 DUF4920 domain-containing protein -
  KJS94_RS15655 (KJS94_15655) recA 3692179..3693180 (+) 1002 WP_214448496.1 recombinase RecA Machinery gene
  KJS94_RS15660 (KJS94_15660) - 3693295..3693459 (-) 165 WP_214448495.1 hypothetical protein -
  KJS94_RS15665 (KJS94_15665) - 3693499..3694326 (+) 828 WP_214448494.1 phosphatase PAP2 family protein -
  KJS94_RS15670 (KJS94_15670) - 3694401..3695678 (-) 1278 WP_214448493.1 hemolysin family protein -
  KJS94_RS15675 (KJS94_15675) gmk 3695703..3696308 (-) 606 WP_214448492.1 guanylate kinase -
  KJS94_RS15680 (KJS94_15680) murA 3696365..3697675 (-) 1311 WP_214448491.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36049.51 Da        Isoelectric Point: 5.3312

>NTDB_id=656596 KJS94_RS15655 WP_214448496.1 3692179..3693180(+) (recA) [Flavihumibacter rivuli strain IMCC34838]
MSNAEKLKALKLTMDKIDKDFGKGSVMMMNEKSAEQQEVVSSGSLGLDVALGIGGFPRGRIIEIYGPESSGKTTIAIHAI
AEAQKKGGICAIIDAEHAFDSSYAQKLGVDVDNLLISQPDYGEQALEIADRLILSGALDVVVIDSVAALVPKGELEGEMG
DSKMGLQARLMSQALRKLTATINKTNTICIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRMSQIKDGDEAVGN
RVKVKVVKNKVAPPFRAAEFDIIFGEGISKVGEIIDMGVDLGIVQKSGSWFSYNNDKLGQGRDAVKQLLRDNPELQAEIE
TKIREKIAEMQSV

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=656596 KJS94_RS15655 WP_214448496.1 3692179..3693180(+) (recA) [Flavihumibacter rivuli strain IMCC34838]
ATGTCAAATGCAGAAAAACTGAAGGCGCTAAAGCTGACAATGGATAAGATCGATAAGGACTTTGGGAAAGGATCGGTGAT
GATGATGAATGAAAAGTCTGCTGAGCAGCAGGAAGTGGTTTCCTCCGGTTCACTTGGATTGGATGTAGCGCTGGGAATTG
GCGGCTTTCCCCGTGGACGTATCATTGAGATCTATGGACCAGAATCATCCGGTAAGACAACAATTGCCATTCATGCCATA
GCGGAAGCCCAAAAGAAGGGTGGTATTTGCGCGATCATCGATGCGGAGCACGCTTTTGACAGCAGTTACGCGCAAAAACT
GGGTGTGGATGTAGATAACCTCCTGATCTCCCAGCCCGATTATGGCGAACAGGCCCTGGAAATCGCTGATAGGCTAATCC
TGTCTGGAGCGCTCGATGTGGTGGTGATCGATTCTGTGGCCGCGCTCGTGCCAAAGGGTGAACTGGAAGGGGAAATGGGC
GATAGCAAAATGGGGCTCCAGGCCCGTTTGATGAGCCAGGCACTTCGTAAGCTAACTGCCACTATCAATAAGACCAATAC
GATCTGTATTTTCATCAACCAGCTTCGTGAGAAGATCGGTGTAATGTTCGGCAACCCCGAAACCACTACAGGTGGTAATG
CGTTGAAGTTCTATGCTTCTGTGCGCCTGGATATCCGCAGGATGAGCCAGATCAAGGATGGTGATGAAGCCGTAGGTAAC
AGGGTTAAAGTAAAAGTGGTAAAGAATAAGGTTGCCCCTCCGTTCCGCGCGGCAGAGTTTGATATCATCTTCGGTGAGGG
TATTTCCAAGGTCGGCGAGATCATTGATATGGGTGTTGACCTGGGTATTGTCCAGAAGAGCGGAAGCTGGTTCAGCTATA
ATAACGACAAACTTGGCCAGGGTAGGGATGCCGTTAAGCAATTGCTACGGGATAACCCAGAACTGCAAGCCGAGATCGAG
ACCAAGATCCGCGAGAAGATCGCAGAAATGCAATCGGTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.976

99.399

0.676
  recA Ralstonia pseudosolanacearum GMI1000

69.132

93.393

0.646
  recA Bacillus subtilis subsp. subtilis str. 168

65.528

96.697

0.634
  recA Neisseria gonorrhoeae MS11

65.421

96.396

0.631
  recA Neisseria gonorrhoeae MS11

65.421

96.396

0.631
  recA Neisseria gonorrhoeae strain FA1090

65.421

96.396

0.631
  recA Helicobacter pylori strain NCTC11637

62.349

99.7

0.622
  recA Helicobacter pylori 26695

62.349

99.7

0.622
  recA Streptococcus mitis SK321

63.077

97.598

0.616
  recA Streptococcus pyogenes NZ131

62.691

98.198

0.616
  recA Acinetobacter baylyi ADP1

63.354

96.697

0.613
  recA Streptococcus pneumoniae TIGR4

62.195

98.498

0.613
  recA Streptococcus pneumoniae Rx1

62.195

98.498

0.613
  recA Streptococcus pneumoniae D39

62.195

98.498

0.613
  recA Streptococcus pneumoniae R6

62.195

98.498

0.613
  recA Streptococcus mitis NCTC 12261

62.769

97.598

0.613
  recA Acinetobacter baumannii D1279779

63.043

96.697

0.61
  recA Streptococcus mutans UA159

62.346

97.297

0.607
  recA Glaesserella parasuis strain SC1401

62.346

97.297

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.539

96.997

0.607
  recA Pseudomonas stutzeri DSM 10701

62.733

96.697

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.037

97.297

0.604
  recA Lactococcus lactis subsp. cremoris KW2

61.231

97.598

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.938

96.096

0.586
  recA Vibrio cholerae strain A1552

60.938

96.096

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

97.297

0.559