Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MG292_RS03120 Genome accession   NZ_CP092332
Coordinates   714220..715227 (-) Length   335 a.a.
NCBI ID   WP_264534152.1    Uniprot ID   -
Organism   Flavobacterium keumense strain K3R-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 709220..720227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MG292_RS03095 (MG292_03095) - 710172..710951 (+) 780 WP_264534157.1 DUF4292 domain-containing protein -
  MG292_RS03100 (MG292_03100) - 710972..712348 (+) 1377 WP_264534156.1 peptidoglycan DD-metalloendopeptidase family protein -
  MG292_RS03105 (MG292_03105) - 712380..712589 (-) 210 WP_264534155.1 helix-turn-helix transcriptional regulator -
  MG292_RS03110 (MG292_03110) - 712593..713129 (-) 537 WP_264534154.1 DUF2975 domain-containing protein -
  MG292_RS03115 (MG292_03115) - 713333..714073 (+) 741 WP_264534153.1 lysophospholipid acyltransferase family protein -
  MG292_RS03120 (MG292_03120) recA 714220..715227 (-) 1008 WP_264534152.1 recombinase RecA Machinery gene
  MG292_RS03125 (MG292_03125) - 715403..716368 (-) 966 WP_264534151.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36235.54 Da        Isoelectric Point: 5.3615

>NTDB_id=656584 MG292_RS03120 WP_264534152.1 714220..715227(-) (recA) [Flavobacterium keumense strain K3R-10]
MSSEKEAKLKALQLTLDKLDKTYGKGTVMKMGDKAIEEVEVISSGSLGVDLALGVGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRHYAEKLGVNIEDLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGTISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRASQIKDGENVI
GNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEIIKKSGSWFSYGDTKLGQGRDAVKALIKDNPELAEE
LEEKIKSQIKELGAE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=656584 MG292_RS03120 WP_264534152.1 714220..715227(-) (recA) [Flavobacterium keumense strain K3R-10]
ATGAGTTCAGAAAAAGAAGCCAAACTAAAAGCCCTACAACTTACACTAGACAAACTAGACAAAACCTACGGAAAAGGAAC
CGTAATGAAAATGGGGGACAAAGCCATTGAAGAAGTAGAAGTAATCTCTTCGGGTTCTCTGGGAGTTGATTTAGCTTTAG
GTGTAGGTGGCTACCCAAAAGGAAGAATTATTGAAATTTATGGTCCTGAATCATCTGGAAAAACAACCTTAACATTACAC
GCTATTGCCGAAGCTCAAAAAGCAGGCGGAATAGCGGCCTTCATCGATGCTGAACATGCCTTTGATAGACATTATGCTGA
GAAACTAGGCGTAAATATTGAAGATTTAATTATCTCACAACCAGATAATGGAGAGCAAGCATTAGAAATTGCCGAAAACT
TAATTCGTTCAGGAGCAATTGATATTGTGGTAATTGACTCAGTAGCTGCTTTGACTCCAAAAAGTGAAATTGAAGGCGAA
ATGGGAGATTCTAAAATGGGACTTCATGCCCGTTTAATGTCACAAGCCTTACGTAAATTAACAGGAACTATTAGCAAAAC
AAACTGTACTGTTTTCTTTATCAATCAATTAAGAGAAAAAATTGGGGTAATGTTTGGAAATCCAGAAACTACAACTGGTG
GTAACGCCTTGAAATTTTATGCGTCTGTTCGTTTGGATATTCGTCGTGCTTCACAAATTAAAGATGGTGAAAACGTAATT
GGAAACAGAACTAAAGTAAAAGTGGTGAAAAATAAAGTAGCTCCCCCATTTAAAACCGCAGAATTTGACATTATGTATGG
CGAAGGCGTGTCTAAAACTGGAGAAATTTTAGACTTAGCAGTAGAATTTGAAATTATCAAAAAATCAGGTTCTTGGTTTA
GCTATGGAGATACAAAACTAGGACAAGGTAGGGATGCTGTTAAAGCCTTAATCAAAGACAACCCAGAATTAGCCGAAGAA
TTAGAAGAAAAAATCAAGTCACAAATCAAAGAATTAGGCGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.167

100

0.794
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.944

96.418

0.636
  recA Helicobacter pylori strain NCTC11637

65.231

97.015

0.633
  recA Helicobacter pylori 26695

65.231

97.015

0.633
  recA Glaesserella parasuis strain SC1401

64.724

97.313

0.63
  recA Acinetobacter baumannii D1279779

64.329

97.91

0.63
  recA Ralstonia pseudosolanacearum GMI1000

67.524

92.836

0.627
  recA Acinetobacter baylyi ADP1

64.596

96.119

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.506

94.328

0.618
  recA Neisseria gonorrhoeae MS11

66.559

92.836

0.618
  recA Neisseria gonorrhoeae MS11

66.559

92.836

0.618
  recA Neisseria gonorrhoeae strain FA1090

66.559

92.836

0.618
  recA Latilactobacillus sakei subsp. sakei 23K

62.539

96.418

0.603
  recA Streptococcus mitis NCTC 12261

62.037

96.716

0.6
  recA Streptococcus mitis SK321

62.037

96.716

0.6
  recA Lactococcus lactis subsp. cremoris KW2

62.422

96.119

0.6
  recA Streptococcus pneumoniae Rx1

61.728

96.716

0.597
  recA Streptococcus pneumoniae R6

61.728

96.716

0.597
  recA Streptococcus pneumoniae TIGR4

61.728

96.716

0.597
  recA Streptococcus pneumoniae D39

61.728

96.716

0.597
  recA Vibrio cholerae strain A1552

61.42

96.716

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.42

96.716

0.594
  recA Streptococcus pyogenes NZ131

61.61

96.418

0.594
  recA Pseudomonas stutzeri DSM 10701

60.802

96.716

0.588
  recA Streptococcus mutans UA159

60.372

96.418

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

96.119

0.567