Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MIH16_RS13945 Genome accession   NZ_CP092283
Coordinates   2974124..2975251 (-) Length   375 a.a.
NCBI ID   WP_249005439.1    Uniprot ID   -
Organism   Marinobacter sp. M4C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2969124..2980251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MIH16_RS13930 (MIH16_13930) fixJ 2970355..2970981 (-) 627 WP_014871838.1 response regulator FixJ -
  MIH16_RS13935 (MIH16_13935) - 2971017..2973425 (-) 2409 WP_249005437.1 ATP-binding protein -
  MIH16_RS13940 (MIH16_13940) - 2973542..2974057 (-) 516 WP_249005438.1 flavodoxin family protein -
  MIH16_RS13945 (MIH16_13945) recA 2974124..2975251 (-) 1128 WP_249005439.1 recombinase RecA Machinery gene
  MIH16_RS13950 (MIH16_13950) - 2975455..2975958 (-) 504 WP_249009009.1 nicotinamide-nucleotide amidohydrolase family protein -
  MIH16_RS13955 (MIH16_13955) mutS 2976065..2978692 (+) 2628 WP_249005440.1 DNA mismatch repair protein MutS -
  MIH16_RS13960 (MIH16_13960) fdxA 2978857..2979180 (+) 324 WP_249005441.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 40171.95 Da        Isoelectric Point: 5.6090

>NTDB_id=656492 MIH16_RS13945 WP_249005439.1 2974124..2975251(-) (recA) [Marinobacter sp. M4C]
MEDNRKKALSAALTQIERQFGKGAIMKMGDHPREAIPSVSTGSLGLDVALGIGGLPYGRVCEIYGPESSGKTTLTLQVIA
EAQKQGKTCAFVDAEHALDPQYAEKLGVNVDELLVSQPDTGEQALEICDMLVRSNAVDVIVVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLNGNVKNANVLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKDGDEVTGNE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRMAEVVDMGVKEGFVDKAGAWYAYNGDKIGQGKANACKFLEENPEMAKEIEA
KVRDKLMPKPEKKDAAKDAGKDVGKNAGEDAAKDVGKNAGKDAAIASAESSDELL

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=656492 MIH16_RS13945 WP_249005439.1 2974124..2975251(-) (recA) [Marinobacter sp. M4C]
ATGGAAGACAACCGCAAGAAAGCTTTATCCGCCGCTCTGACCCAGATTGAACGCCAGTTTGGTAAAGGCGCCATCATGAA
GATGGGCGACCACCCCCGTGAAGCAATCCCGTCCGTTTCTACCGGTTCTCTTGGTCTGGACGTTGCTCTTGGCATTGGTG
GCCTGCCTTATGGCCGGGTTTGTGAAATCTACGGCCCTGAAAGCTCTGGTAAAACTACGCTGACTTTGCAGGTTATTGCC
GAAGCCCAGAAGCAGGGCAAAACGTGTGCTTTTGTTGATGCTGAGCACGCCCTTGATCCTCAATATGCTGAAAAGCTGGG
CGTGAACGTTGATGAGCTGCTTGTTTCCCAGCCCGACACCGGTGAGCAGGCGTTAGAAATCTGCGACATGCTGGTGCGCT
CCAACGCGGTGGATGTCATCGTCGTGGACTCCGTTGCCGCATTAACGCCAAAAGCTGAAATTGAAGGCGAAATGGGCGAC
TCTCATGTTGGTCTTCAGGCCCGCCTGATGTCACAGGCTCTGCGCAAACTGAATGGCAACGTCAAGAATGCCAACGTCCT
GCTGATTTTCATCAACCAGATCCGCATGAAAATAGGCGTAATGTTCGGCAGTCCCGAAACCACCACCGGCGGCAACGCGT
TGAAATTCTACGCCTCTGTGCGTCTGGATATCCGCCGCATTGGCGCAGTGAAAGACGGCGACGAAGTGACCGGTAACGAA
ACCCGGGTGAAAGTGGTTAAAAACAAAGTGGCACCGCCGTTCCGCCAGGCCGAATTCCAGATTTTGTACGGTAAGGGCAT
TTACCGCATGGCCGAAGTGGTGGACATGGGTGTAAAGGAAGGCTTTGTGGATAAGGCTGGCGCCTGGTACGCCTATAACG
GTGACAAAATTGGCCAAGGCAAAGCCAACGCCTGTAAATTCCTGGAAGAAAACCCGGAAATGGCGAAAGAAATTGAAGCC
AAAGTGCGCGACAAGCTGATGCCCAAGCCAGAGAAAAAAGACGCGGCAAAAGATGCAGGGAAAGATGTAGGGAAAAATGC
AGGGGAAGACGCGGCAAAGGATGTAGGGAAAAACGCGGGAAAGGATGCAGCAATAGCGTCTGCAGAATCCAGCGACGAAC
TACTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.957

87.2

0.715
  recA Acinetobacter baylyi ADP1

72.189

90.133

0.651
  recA Ralstonia pseudosolanacearum GMI1000

71.386

90.4

0.645
  recA Vibrio cholerae strain A1552

72.81

88.267

0.643
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.81

88.267

0.643
  recA Glaesserella parasuis strain SC1401

72.561

87.467

0.635
  recA Acinetobacter baumannii D1279779

72.171

87.2

0.629
  recA Neisseria gonorrhoeae MS11

71.605

86.4

0.619
  recA Neisseria gonorrhoeae MS11

71.605

86.4

0.619
  recA Neisseria gonorrhoeae strain FA1090

71.605

86.4

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

87.2

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.607

89.6

0.552
  recA Helicobacter pylori strain NCTC11637

60.767

90.4

0.549
  recA Helicobacter pylori 26695

60.767

90.4

0.549
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

85.6

0.536
  recA Streptococcus mutans UA159

59.692

86.667

0.517
  recA Latilactobacillus sakei subsp. sakei 23K

59.938

85.867

0.515
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

86.4

0.515
  recA Streptococcus pyogenes NZ131

58.232

87.467

0.509
  recA Streptococcus pneumoniae D39

58.282

86.933

0.507
  recA Streptococcus pneumoniae R6

58.282

86.933

0.507
  recA Streptococcus pneumoniae TIGR4

58.282

86.933

0.507
  recA Streptococcus pneumoniae Rx1

58.282

86.933

0.507
  recA Streptococcus mitis SK321

58.204

86.133

0.501
  recA Streptococcus mitis NCTC 12261

58.204

86.133

0.501
  recA Lactococcus lactis subsp. cremoris KW2

57.585

86.133

0.496