Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPY66_RS07650 Genome accession   NZ_CP092282
Coordinates   1629920..1630966 (+) Length   348 a.a.
NCBI ID   WP_337987486.1    Uniprot ID   -
Organism   Dehalobacter sp. DCM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1624920..1635966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY66_RS07635 (LPY66_07600) rimO 1626542..1627864 (+) 1323 WP_337987483.1 MiaB/RimO family radical SAM methylthiotransferase -
  LPY66_RS07640 (LPY66_07605) pgsA 1627861..1628424 (+) 564 WP_337987484.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LPY66_RS07645 (LPY66_07610) - 1628515..1629759 (+) 1245 WP_337987485.1 competence/damage-inducible protein A -
  LPY66_RS07650 (LPY66_07615) recA 1629920..1630966 (+) 1047 WP_337987486.1 DNA recombination/repair protein RecA Machinery gene
  LPY66_RS07655 (LPY66_07620) - 1630956..1631504 (+) 549 WP_337987487.1 regulatory protein RecX -
  LPY66_RS07660 (LPY66_07625) rny 1631938..1633455 (+) 1518 WP_337988045.1 ribonuclease Y -
  LPY66_RS07665 (LPY66_07630) - 1633718..1634230 (+) 513 WP_337987488.1 hypothetical protein -
  LPY66_RS07670 (LPY66_07635) - 1634240..1635049 (+) 810 WP_337987489.1 TIGR00282 family metallophosphoesterase -
  LPY66_RS07675 (LPY66_07640) - 1635328..1635588 (+) 261 WP_026156341.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37483.87 Da        Isoelectric Point: 5.4813

>NTDB_id=656460 LPY66_RS07650 WP_337987486.1 1629920..1630966(+) (recA) [Dehalobacter sp. DCM]
MAAPDKLKALDMALSQIEKQFGKGAIMKLGEASDRMAVETISTGSLALDLALGVGGVPRGRVIEIYGPESSGKTTVALHI
IAEAQKTGGVAAFIDAEHALDPIYARALGVNVDDLLVSQPDTGEQALEICEALVRSGAIDVIVIDSVAALVPRAEIEGEM
GDSHVGLHARLMSQALRKLTGAISKSHTCVIFINQIREKVGIMFGNPETTTGGRALKFYASVRLEVKKQDIIKQGQDIIG
NRTRVKVVKNKVAPPFSFADFDLIYGEGISREGSIVDMGSEAGIMLKSGAWYSYNGERLGQGRENVKDFLRQHPAIADEI
ENKIRDTVLNVKEKPHTAEDTKISDYDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=656460 LPY66_RS07650 WP_337987486.1 1629920..1630966(+) (recA) [Dehalobacter sp. DCM]
ATGGCTGCTCCGGATAAATTAAAAGCGTTGGATATGGCACTCAGTCAGATTGAGAAACAATTCGGCAAGGGTGCTATTAT
GAAATTGGGAGAGGCTTCAGACCGCATGGCGGTAGAAACAATCTCAACGGGTTCCTTGGCACTGGATTTGGCTTTAGGCG
TGGGCGGAGTCCCGCGAGGCCGTGTTATTGAAATATACGGACCGGAATCATCCGGAAAGACAACCGTCGCATTACATATT
ATCGCTGAAGCCCAGAAAACGGGGGGAGTAGCGGCATTCATCGATGCGGAGCACGCCCTTGACCCGATCTATGCGCGTGC
CCTGGGCGTTAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACGGGGGAACAGGCGTTAGAAATCTGCGAAGCGCTGG
TTCGCAGCGGAGCGATAGATGTTATCGTTATCGACTCCGTCGCTGCCCTTGTCCCGAGAGCGGAGATCGAGGGCGAAATG
GGTGACTCCCATGTGGGACTCCACGCCAGACTGATGTCACAGGCTCTGCGAAAGCTTACAGGTGCTATCAGCAAGAGCCA
TACATGCGTGATCTTTATTAACCAGATCCGTGAAAAAGTTGGCATCATGTTCGGAAATCCGGAGACAACCACAGGCGGAA
GAGCATTGAAGTTCTATGCTTCTGTTAGATTGGAAGTCAAGAAACAAGATATCATCAAGCAAGGGCAGGATATCATCGGA
AATCGTACCCGGGTAAAAGTAGTTAAGAACAAAGTCGCGCCACCTTTTAGCTTTGCCGATTTTGATTTAATTTACGGCGA
AGGGATCTCCCGAGAAGGCAGTATCGTTGATATGGGATCGGAAGCCGGTATTATGCTCAAATCCGGCGCGTGGTACTCTT
ATAATGGGGAACGCCTTGGTCAGGGAAGAGAGAATGTGAAGGACTTTTTGCGCCAGCATCCGGCTATTGCTGACGAAATC
GAAAACAAGATTCGGGATACGGTTTTGAATGTAAAAGAAAAGCCGCACACGGCTGAGGATACGAAAATAAGCGATTATGA
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.429

92.529

0.661
  recA Latilactobacillus sakei subsp. sakei 23K

65.23

100

0.652
  recA Pseudomonas stutzeri DSM 10701

62.899

99.138

0.624
  recA Neisseria gonorrhoeae MS11

67.29

92.241

0.621
  recA Neisseria gonorrhoeae MS11

67.29

92.241

0.621
  recA Neisseria gonorrhoeae strain FA1090

67.29

92.241

0.621
  recA Ralstonia pseudosolanacearum GMI1000

69.355

89.08

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.538

93.391

0.612
  recA Streptococcus mutans UA159

65.538

93.391

0.612
  recA Glaesserella parasuis strain SC1401

61.808

98.563

0.609
  recA Vibrio cholerae strain A1552

61.877

97.989

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.877

97.989

0.606
  recA Acinetobacter baylyi ADP1

62.5

96.552

0.603
  recA Streptococcus pyogenes NZ131

64.615

93.391

0.603
  recA Acinetobacter baumannii D1279779

63.692

93.391

0.595
  recA Streptococcus pneumoniae R6

63.385

93.391

0.592
  recA Streptococcus pneumoniae Rx1

63.385

93.391

0.592
  recA Streptococcus pneumoniae D39

63.385

93.391

0.592
  recA Streptococcus pneumoniae TIGR4

63.385

93.391

0.592
  recA Helicobacter pylori 26695

63.385

93.391

0.592
  recA Helicobacter pylori strain NCTC11637

63.385

93.391

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.805

94.253

0.592
  recA Streptococcus mitis NCTC 12261

63.665

92.529

0.589
  recA Streptococcus mitis SK321

62.462

93.391

0.583
  recA Lactococcus lactis subsp. cremoris KW2

62.733

92.529

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.182

94.54

0.569