Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MF271_RS14980 Genome accession   NZ_CP092190
Coordinates   2433666..2434691 (-) Length   341 a.a.
NCBI ID   WP_239051115.1    Uniprot ID   -
Organism   Deinococcus sp. KNUC1210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2428666..2439691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF271_RS14955 (MF271_14955) - 2429029..2429289 (+) 261 WP_239049480.1 hypothetical protein -
  MF271_RS14960 (MF271_14960) - 2429375..2430541 (-) 1167 WP_239049481.1 tetratricopeptide repeat protein -
  MF271_RS14965 (MF271_14965) - 2430680..2431174 (-) 495 WP_239049482.1 hypothetical protein -
  MF271_RS14970 (MF271_14970) hemB 2431251..2432240 (-) 990 WP_239049483.1 porphobilinogen synthase -
  MF271_RS14975 (MF271_14975) - 2432336..2433538 (-) 1203 WP_239049484.1 acetyl-CoA C-acyltransferase -
  MF271_RS14980 (MF271_14980) recA 2433666..2434691 (-) 1026 WP_239051115.1 recombinase RecA Machinery gene
  MF271_RS14985 (MF271_14985) thpR 2434759..2435535 (-) 777 WP_239049485.1 RNA 2',3'-cyclic phosphodiesterase -
  MF271_RS14990 (MF271_14990) - 2435752..2437572 (-) 1821 WP_239049486.1 N-acetylmuramoyl-L-alanine amidase -
  MF271_RS14995 (MF271_14995) - 2437765..2438367 (+) 603 WP_239049487.1 NUDIX hydrolase -
  MF271_RS15000 (MF271_15000) - 2438364..2438972 (+) 609 WP_239049488.1 YigZ family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36024.43 Da        Isoelectric Point: 5.3008

>NTDB_id=656304 MF271_RS14980 WP_239051115.1 2433666..2434691(-) (recA) [Deinococcus sp. KNUC1210]
MAMGQIEKQFGKGAIMRLGADTRLDIQTISTGSLSLDLALGVGGIPRGRVTEIYGPESGGKTTLALAIIAQAQKAGGTAA
FIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAVDIVVVDSVAALTPRAEIEGDMGDSLPGLQARLM
SQALRKLTGILSKTNTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIGQPTKIGNDSVANTVKIKTVKNK
VAAPFKEVELSLVYGKGFDQLSDLVTLAADMDIVKKAGSFYSYGDERIGQGKEKAMAYIGERPAMEQEIRDRVMAAIKAG
AAGRPEIAAVAEIADVAMDAN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=656304 MF271_RS14980 WP_239051115.1 2433666..2434691(-) (recA) [Deinococcus sp. KNUC1210]
ATGGCGATGGGGCAGATCGAGAAGCAGTTCGGCAAGGGCGCGATCATGCGCCTGGGGGCCGACACCCGGCTCGACATCCA
GACGATCAGCACCGGCAGCCTGAGCCTCGATCTGGCGCTGGGCGTCGGCGGCATTCCGCGTGGACGGGTCACCGAGATCT
ATGGCCCCGAGTCGGGCGGCAAGACCACGCTGGCGCTCGCCATCATCGCGCAGGCGCAGAAAGCGGGTGGCACGGCGGCC
TTTATCGACGCCGAGCACGCTCTGGACCCGGTGTATGCCCGCGCTCTGGGCGTGAACACCGATGAACTGCTGGTGTCGCA
GCCCGACAACGGCGAGCAGGCGCTGGAGATCATGGAGCTGCTCGTTCGCAGCGGCGCCGTCGATATCGTGGTGGTGGACA
GCGTGGCTGCCCTGACGCCGCGTGCGGAAATCGAAGGTGACATGGGCGACAGCCTGCCGGGTCTGCAGGCCCGCCTGATG
TCGCAGGCGCTCCGCAAGCTGACGGGCATCCTGTCGAAGACCAATACCGCCGCTATCTTCATCAATCAGGTGCGCGAGAA
GATCGGCGTGATGTACGGCAACCCCGAGACCACCACCGGAGGCCGGGCGCTGAAGTTCTACGCCAGCGTGCGTCTCGACG
TGCGAAAGATCGGCCAGCCCACCAAGATCGGCAACGATTCGGTGGCCAACACGGTCAAGATCAAGACCGTGAAGAACAAG
GTCGCGGCTCCCTTCAAGGAAGTCGAGCTTTCGCTGGTGTACGGCAAGGGCTTCGATCAGCTCTCCGATCTGGTCACGCT
GGCCGCCGACATGGACATCGTGAAGAAGGCGGGATCGTTCTACAGCTACGGCGACGAGCGCATCGGACAGGGCAAGGAAA
AGGCCATGGCCTATATCGGTGAGCGCCCCGCGATGGAACAGGAAATCCGTGACCGCGTGATGGCCGCCATCAAGGCGGGC
GCAGCGGGCAGGCCGGAAATCGCGGCGGTGGCCGAGATCGCTGACGTGGCGATGGACGCCAACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

91.536

93.548

0.856
  recA Glaesserella parasuis strain SC1401

60.819

100

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

63.924

92.669

0.592
  recA Acinetobacter baumannii D1279779

64.103

91.496

0.587
  recA Streptococcus pneumoniae D39

63.492

92.375

0.587
  recA Streptococcus pneumoniae TIGR4

63.492

92.375

0.587
  recA Streptococcus pneumoniae R6

63.492

92.375

0.587
  recA Streptococcus pneumoniae Rx1

63.492

92.375

0.587
  recA Streptococcus mitis NCTC 12261

63.175

92.375

0.584
  recA Streptococcus mitis SK321

63.175

92.375

0.584
  recA Vibrio cholerae strain A1552

62.776

92.962

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.776

92.962

0.584
  recA Acinetobacter baylyi ADP1

64.286

90.323

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

62.222

92.375

0.575
  recA Streptococcus pyogenes NZ131

62.222

92.375

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.006

93.255

0.569
  recA Pseudomonas stutzeri DSM 10701

57.784

97.947

0.566
  recA Streptococcus mutans UA159

60.952

92.375

0.563
  recA Neisseria gonorrhoeae strain FA1090

60.127

92.669

0.557
  recA Neisseria gonorrhoeae MS11

60.127

92.669

0.557
  recA Neisseria gonorrhoeae MS11

60.127

92.669

0.557
  recA Ralstonia pseudosolanacearum GMI1000

61.039

90.323

0.551
  recA Helicobacter pylori 26695

59.119

93.255

0.551
  recA Helicobacter pylori strain NCTC11637

59.119

93.255

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.491

93.255

0.545
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.125

93.842

0.545