Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HP1WT_RS00795 Genome accession   NZ_AP013354
Coordinates   162879..163922 (+) Length   347 a.a.
NCBI ID   WP_000963128.1    Uniprot ID   A0AAC8N0B3
Organism   Helicobacter pylori 26695-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157879..168922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP1WT_RS00760 - 158472..158690 (+) 219 WP_001862885.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -
  HP1WT_RS00765 ccoP 158692..159570 (+) 879 WP_000346888.1 cytochrome-c oxidase, cbb3-type subunit III -
  HP1WT_RS00770 - 159581..159787 (+) 207 WP_000670506.1 DUF4006 family protein -
  HP1WT_RS00775 - 159888..160472 (+) 585 WP_001221992.1 hypothetical protein -
  HP1WT_RS00780 - 160485..161075 (+) 591 WP_000660370.1 hypothetical protein -
  HP1WT_RS00785 - 161153..161920 (+) 768 WP_000506345.1 hypothetical protein -
  HP1WT_RS00790 - 161917..162780 (-) 864 WP_000626212.1 menaquinone biosynthesis family protein -
  HP1WT_RS00795 recA 162879..163922 (+) 1044 WP_000963128.1 recombinase RecA Machinery gene
  HP1WT_RS00800 eno 163934..165214 (+) 1281 WP_000955673.1 phosphopyruvate hydratase -
  HP1WT_RS00805 - 165207..165482 (+) 276 WP_000146222.1 hypothetical protein -
  HP1WT_RS00810 - 165500..166096 (+) 597 WP_001862880.1 AMIN domain-containing protein -
  HP1WT_RS00815 - 166101..166589 (+) 489 WP_001164290.1 shikimate kinase -
  HP1WT_RS00820 - 166611..167567 (+) 957 WP_000952264.1 PDC sensor domain-containing protein -
  HP1WT_RS00825 rfaJ 167564..168682 (-) 1119 WP_000022419.1 HP0159 family lipopolysaccharide 1,6-glucosyltransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37686.39 Da        Isoelectric Point: 5.5047

>NTDB_id=65618 HP1WT_RS00795 WP_000963128.1 162879..163922(+) (recA) [Helicobacter pylori 26695-1]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIASLKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=65618 HP1WT_RS00795 WP_000963128.1 162879..163922(+) (recA) [Helicobacter pylori 26695-1]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAGGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGTGGGAAGACCACTCTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGATGTGCATTACGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCTGTGGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAGATGAA
CACTACTCTCATTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAACGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCCTCCCTCAAACAAAACGAACAGCATATC
GGTAATAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCTTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGATTACGGTGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCAGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCGGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori 26695

100

100

1
  recA Helicobacter pylori strain NCTC11637

99.424

100

0.994
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

79.268

94.524

0.749
  recA Neisseria gonorrhoeae MS11

67.077

93.66

0.628
  recA Neisseria gonorrhoeae MS11

67.077

93.66

0.628
  recA Neisseria gonorrhoeae strain FA1090

67.077

93.66

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Ralstonia pseudosolanacearum GMI1000

62.202

96.83

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Pseudomonas stutzeri DSM 10701

60.234

98.559

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.012

96.83

0.591
  recA Vibrio cholerae strain A1552

61.012

96.83

0.591
  recA Glaesserella parasuis strain SC1401

60.976

94.524

0.576
  recA Streptococcus pneumoniae Rx1

56.125

100

0.568
  recA Streptococcus pneumoniae D39

56.125

100

0.568
  recA Streptococcus pneumoniae R6

56.125

100

0.568
  recA Streptococcus pneumoniae TIGR4

56.125

100

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

54.902

100

0.565
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.813

0.55
  recA Streptococcus pyogenes NZ131

57.879

95.101

0.55
  recA Streptococcus mitis NCTC 12261

57.751

94.813

0.548
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus mutans UA159

56.287

96.254

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53

Multiple sequence alignment