Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MGG13_RS05325 Genome accession   NZ_CP092179
Coordinates   1035664..1036749 (+) Length   361 a.a.
NCBI ID   WP_133432094.1    Uniprot ID   A0A4R6BDE9
Organism   Macrococcus brunensis strain 18KM571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030664..1041749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG13_RS05300 (MGG13_05300) yfmH 1031287..1032558 (+) 1272 WP_133432089.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MGG13_RS05305 (MGG13_05305) ymfI 1032551..1033237 (+) 687 WP_239035627.1 elongation factor P 5-aminopentanone reductase -
  MGG13_RS05310 (MGG13_05310) - 1033245..1034030 (+) 786 WP_208001765.1 YmfK family protein -
  MGG13_RS05315 (MGG13_05315) - 1034045..1034863 (+) 819 WP_239035628.1 helix-turn-helix domain-containing protein -
  MGG13_RS05320 (MGG13_05320) pgsA 1034878..1035447 (+) 570 WP_239035629.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MGG13_RS05325 (MGG13_05325) recA 1035664..1036749 (+) 1086 WP_133432094.1 recombinase RecA Machinery gene
  MGG13_RS05330 (MGG13_05330) rny 1036922..1038475 (+) 1554 WP_239035630.1 ribonuclease Y -
  MGG13_RS05335 (MGG13_05335) - 1038621..1038845 (+) 225 WP_133432096.1 hypothetical protein -
  MGG13_RS05340 (MGG13_05340) - 1038888..1039307 (+) 420 WP_133432452.1 hypothetical protein -
  MGG13_RS05345 (MGG13_05345) nrdD 1039389..1041257 (+) 1869 WP_420827910.1 anaerobic ribonucleoside-triphosphate reductase -
  MGG13_RS05350 (MGG13_05350) nrdG 1041254..1041736 (+) 483 WP_133432450.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 39008.18 Da        Isoelectric Point: 4.7952

>NTDB_id=656131 MGG13_RS05325 WP_133432094.1 1035664..1036749(+) (recA) [Macrococcus brunensis strain 18KM571]
MSERQKALDTVIKNMEKSFGKGAVMKLGESTSRNVSTISSGSITLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPVYAKNLGVDTENLYLSQPDHGEQGLEIAEAFVRSGAIDIIVIDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAIAKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGMDVVGNRT
KIKVVKNKVAPPFKVAEVDIMYGQGISREGEIVDLGTEFEVIDKSGAWYSYNGERLGQGKENVKNFMRENPEVMAEIDRK
IRQEMGIIAPDEVTDSPEKGASESAAPQKEEADSLFDDELV

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=656131 MGG13_RS05325 WP_133432094.1 1035664..1036749(+) (recA) [Macrococcus brunensis strain 18KM571]
TTGAGCGAACGTCAAAAAGCACTCGATACAGTCATTAAAAATATGGAAAAATCATTCGGTAAAGGCGCAGTCATGAAGCT
GGGTGAAAGTACATCTCGCAATGTTTCCACTATTTCAAGTGGTTCTATTACACTGGACAACGCACTTGGAGTAGGCGGTT
ATCCTAAAGGGCGTATCATTGAGATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTCGCACTGCACGCGATTGCTGAA
GTGCAGGCTCAGGGCGGAACAGCTGCATTCATCGATGCAGAGCATGCTTTAGATCCAGTGTATGCAAAGAATTTAGGTGT
AGATACTGAGAATCTTTATTTATCTCAGCCGGACCACGGCGAACAAGGTCTGGAAATTGCTGAAGCGTTTGTGCGAAGCG
GTGCGATTGATATTATCGTGATTGACTCCGTGGCTGCACTGACACCTAAAGCGGAGATTGAAGGGGAGATGGGTGACTCT
CATATGGGTCTGCAGGCTCGTCTGATGTCACAGGCGCTTCGTAAACTTTCTGGTGCGATCGCGAAATCAAACACGATTGC
TATTTTCATTAACCAGGTTCGTGAAAAAATCGGTGTGATGTTCGGTAATCCTGAGACAACACCTGGTGGCCGTGCCCTTA
AATTCTACAGCTCAGTCCGTTTAGAAGTACGTCGTGCTGAACAACTGAAACAAGGTATGGATGTTGTCGGTAACCGTACG
AAGATTAAAGTTGTAAAAAATAAAGTAGCACCACCATTTAAAGTAGCTGAAGTAGATATCATGTACGGTCAAGGGATTTC
ACGCGAAGGTGAGATTGTCGACCTTGGTACAGAGTTTGAAGTGATTGATAAATCAGGTGCATGGTACTCTTATAATGGCG
AGCGTTTAGGTCAAGGTAAAGAAAATGTGAAGAACTTCATGAGAGAAAATCCTGAAGTGATGGCAGAAATTGACCGTAAG
ATTCGTCAGGAGATGGGCATTATTGCGCCCGATGAAGTGACTGACTCACCTGAAAAGGGTGCTAGTGAATCAGCAGCACC
TCAGAAAGAAGAAGCAGATTCTTTATTTGATGACGAATTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R6BDE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

90.582

0.693
  recA Latilactobacillus sakei subsp. sakei 23K

69.436

93.352

0.648
  recA Streptococcus mutans UA159

64.571

96.953

0.626
  recA Streptococcus pneumoniae D39

61.69

98.338

0.607
  recA Streptococcus pneumoniae Rx1

61.69

98.338

0.607
  recA Streptococcus pneumoniae R6

61.69

98.338

0.607
  recA Streptococcus pneumoniae TIGR4

61.69

98.338

0.607
  recA Streptococcus pyogenes NZ131

66.768

90.859

0.607
  recA Streptococcus mitis SK321

63.717

93.906

0.598
  recA Streptococcus mitis NCTC 12261

62.139

95.845

0.596
  recA Lactococcus lactis subsp. cremoris KW2

63.393

93.075

0.59
  recA Neisseria gonorrhoeae MS11

64.11

90.305

0.579
  recA Neisseria gonorrhoeae MS11

64.11

90.305

0.579
  recA Neisseria gonorrhoeae strain FA1090

64.11

90.305

0.579
  recA Ralstonia pseudosolanacearum GMI1000

64.198

89.751

0.576
  recA Acinetobacter baylyi ADP1

61.791

92.798

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.385

90.028

0.571
  recA Acinetobacter baumannii D1279779

63.975

89.197

0.571
  recA Vibrio cholerae strain A1552

63.75

88.643

0.565
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

88.643

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

91.413

0.565
  recA Helicobacter pylori strain NCTC11637

62.154

90.028

0.56
  recA Helicobacter pylori 26695

62.154

90.028

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

88.643

0.543
  recA Glaesserella parasuis strain SC1401

60.062

89.474

0.537
  recA Pseudomonas stutzeri DSM 10701

60.248

89.197

0.537