Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MGG12_RS05330 Genome accession   NZ_CP092172
Coordinates   1030989..1032074 (+) Length   361 a.a.
NCBI ID   WP_275422263.1    Uniprot ID   -
Organism   Macrococcus brunensis strain 18KM1742     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1030989..1037693 1030989..1032074 within 0


Gene organization within MGE regions


Location: 1030989..1037693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGG12_RS05330 (MGG12_05330) recA 1030989..1032074 (+) 1086 WP_275422263.1 recombinase RecA Machinery gene
  MGG12_RS05335 (MGG12_05335) rny 1032247..1033800 (+) 1554 WP_239035630.1 ribonuclease Y -
  MGG12_RS05340 (MGG12_05340) - 1033946..1034170 (+) 225 WP_133432096.1 hypothetical protein -
  MGG12_RS05345 (MGG12_05345) - 1034213..1034632 (+) 420 WP_239047961.1 hypothetical protein -
  MGG12_RS05350 (MGG12_05350) nrdD 1034780..1036581 (+) 1802 Protein_1060 anaerobic ribonucleoside-triphosphate reductase -
  MGG12_RS05355 (MGG12_05355) nrdG 1036578..1037060 (+) 483 WP_239047962.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  MGG12_RS05360 (MGG12_05360) - 1037124..1037693 (-) 570 WP_239047963.1 hypothetical protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38994.16 Da        Isoelectric Point: 4.7918

>NTDB_id=656101 MGG12_RS05330 WP_275422263.1 1030989..1032074(+) (recA) [Macrococcus brunensis strain 18KM1742]
MSERQKALDTVIKNMEKSFGKGAVMKLGESTSRNVSTISSGSITLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPVYAKNLGVDTENLYLSQPDHGEQGLEIAEAFVRSGAIDIIVIDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGAIAKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGMDVVGNRT
KIKVVKNKVAPPFKVAEVDIMYGQGISREGEIVDLGTEFEVIDKSGAWYSYNGDRLGQGKENVKNFMRENPEVMAEIDRK
IRQEMGIIAPDEVTDSPEKGASESAAPQKEEADSLFDDELV

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=656101 MGG12_RS05330 WP_275422263.1 1030989..1032074(+) (recA) [Macrococcus brunensis strain 18KM1742]
TTGAGCGAACGTCAAAAAGCACTCGATACAGTCATTAAAAATATGGAAAAATCATTCGGTAAAGGCGCAGTCATGAAGCT
GGGTGAAAGTACATCTCGCAATGTTTCCACTATTTCAAGTGGTTCTATTACACTGGACAACGCACTTGGAGTAGGCGGTT
ATCCTAAAGGGCGTATCATTGAGATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTCGCACTGCACGCGATTGCTGAA
GTGCAGGCTCAGGGCGGAACAGCTGCATTCATCGATGCAGAGCATGCTTTAGATCCAGTGTATGCCAAGAATTTAGGTGT
AGATACTGAGAATCTTTATTTATCTCAGCCGGACCACGGTGAACAAGGTCTGGAAATTGCTGAAGCGTTTGTGCGAAGCG
GTGCGATTGATATTATCGTGATTGACTCCGTAGCTGCACTGACACCTAAAGCGGAGATTGAAGGGGAGATGGGTGACTCT
CATATGGGTCTGCAGGCTCGTCTGATGTCACAGGCGCTTCGTAAACTTTCTGGTGCGATCGCGAAATCAAACACGATTGC
TATTTTCATTAACCAGGTTCGTGAAAAAATCGGTGTGATGTTCGGTAATCCTGAGACAACACCTGGTGGCCGTGCCCTTA
AATTCTACAGCTCAGTCCGTTTAGAAGTACGTCGTGCTGAACAACTGAAACAAGGTATGGATGTTGTCGGTAACCGTACG
AAGATTAAAGTTGTAAAAAATAAAGTAGCACCACCATTTAAAGTAGCTGAAGTAGATATCATGTACGGTCAAGGGATTTC
ACGCGAAGGTGAGATTGTCGATCTTGGTACAGAGTTTGAAGTGATTGATAAATCAGGTGCATGGTACTCTTATAATGGCG
ATCGTTTAGGTCAAGGTAAAGAAAATGTGAAGAATTTCATGAGAGAAAATCCTGAAGTGATGGCAGAAATTGACCGTAAG
ATTCGTCAGGAGATGGGCATTATTGCGCCCGATGAAGTGACTGACTCACCTGAAAAGGGTGCTAGTGAATCAGCAGCACC
TCAGAAAGAAGAAGCAGATTCTTTATTTGATGACGAATTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.147

90.582

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

69.139

93.352

0.645
  recA Streptococcus mutans UA159

64.286

96.953

0.623
  recA Streptococcus pyogenes NZ131

66.463

90.859

0.604
  recA Streptococcus pneumoniae D39

61.408

98.338

0.604
  recA Streptococcus pneumoniae Rx1

61.408

98.338

0.604
  recA Streptococcus pneumoniae R6

61.408

98.338

0.604
  recA Streptococcus pneumoniae TIGR4

61.408

98.338

0.604
  recA Streptococcus mitis SK321

63.422

93.906

0.596
  recA Streptococcus mitis NCTC 12261

61.85

95.845

0.593
  recA Lactococcus lactis subsp. cremoris KW2

63.095

93.075

0.587
  recA Neisseria gonorrhoeae MS11

64.11

90.305

0.579
  recA Neisseria gonorrhoeae MS11

64.11

90.305

0.579
  recA Neisseria gonorrhoeae strain FA1090

64.11

90.305

0.579
  recA Ralstonia pseudosolanacearum GMI1000

63.889

89.751

0.573
  recA Acinetobacter baylyi ADP1

61.791

92.798

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.385

90.028

0.571
  recA Acinetobacter baumannii D1279779

63.975

89.197

0.571
  recA Vibrio cholerae strain A1552

64.062

88.643

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

88.643

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

91.413

0.565
  recA Helicobacter pylori strain NCTC11637

62.154

90.028

0.56
  recA Helicobacter pylori 26695

62.154

90.028

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

88.643

0.54
  recA Glaesserella parasuis strain SC1401

60.062

89.474

0.537
  recA Pseudomonas stutzeri DSM 10701

60.248

89.197

0.537