Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L3Q72_RS12350 Genome accession   NZ_CP092106
Coordinates   2771715..2772812 (-) Length   365 a.a.
NCBI ID   WP_275130243.1    Uniprot ID   -
Organism   Vibrio sp. JC009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2766715..2777812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Q72_RS12335 (L3Q72_12325) - 2766867..2768051 (-) 1185 WP_275130240.1 aspartate kinase -
  L3Q72_RS12340 (L3Q72_12330) alaS 2768200..2770785 (-) 2586 WP_275130241.1 alanine--tRNA ligase -
  L3Q72_RS12345 (L3Q72_12335) recX 2770981..2771424 (-) 444 WP_275130242.1 recombination regulator RecX -
  L3Q72_RS12350 (L3Q72_12340) recA 2771715..2772812 (-) 1098 WP_275130243.1 recombinase RecA Machinery gene
  L3Q72_RS12355 (L3Q72_12345) - 2772951..2774450 (+) 1500 WP_275132105.1 ATP-binding cassette domain-containing protein -
  L3Q72_RS12360 (L3Q72_12350) - 2774613..2775131 (-) 519 WP_275130244.1 GNAT family N-acetyltransferase -
  L3Q72_RS12365 (L3Q72_12355) - 2775139..2775489 (-) 351 WP_275130245.1 antibiotic biosynthesis monooxygenase -
  L3Q72_RS12370 (L3Q72_12360) - 2775797..2776072 (+) 276 WP_275130246.1 nitrogenase-stabilizing/protective protein NifW -
  L3Q72_RS12375 (L3Q72_12365) - 2776137..2776640 (-) 504 WP_275130247.1 ImmA/IrrE family metallo-endopeptidase -
  L3Q72_RS12380 (L3Q72_12370) - 2776637..2777080 (-) 444 WP_275130248.1 hypothetical protein -
  L3Q72_RS12385 (L3Q72_12375) - 2777455..2777799 (-) 345 WP_275130249.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39467.33 Da        Isoelectric Point: 5.3508

>NTDB_id=655917 L3Q72_RS12350 WP_275130243.1 2771715..2772812(-) (recA) [Vibrio sp. JC009]
MNQQYNNQKSLRTLCVEKVMDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRII
EIYGPESSGKTTLTLELIAAAQKAGKTCAFVDAEHALDPVYAKRLGVNIDDLLVSQPDTGEQALEICDALARSGAVDVLV
VDSVAALTPKAEIEGEMGDSHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVR
LDIRRTGAIKEGDEVVGNETKIKVVKNKIAAPFKEAHTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYKGDKIGQGK
ANACKFMRENPEAATEIDTKLRELLLTPAAIEEDDAVPEMPADAE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=655917 L3Q72_RS12350 WP_275130243.1 2771715..2772812(-) (recA) [Vibrio sp. JC009]
ATGAATCAACAGTATAATAATCAAAAAAGTTTAAGAACACTTTGTGTGGAGAAAGTAATGGACGAGAACAAACAGAAGGC
TCTTGCCGCGGCGCTTGGTCAGATTGAAAAACAATTTGGTAAAGGTTCTATCATGCGCCTTGGTGATAACCGCACCATGG
ATGTAGAGACGATTTCAACAGGCTCTCTTTCACTGGATATTGCTCTGGGTGCTGGTGGTCTTCCAATGGGTCGTATTATT
GAAATCTACGGTCCGGAAAGTTCTGGTAAAACAACACTGACTCTTGAGCTTATCGCTGCTGCTCAGAAAGCAGGTAAAAC
CTGTGCATTCGTGGATGCAGAGCACGCTCTTGATCCTGTTTACGCGAAAAGACTTGGCGTAAACATCGACGATCTTCTGG
TTTCACAGCCGGATACCGGTGAACAGGCGCTGGAAATCTGTGATGCGCTGGCTCGTTCAGGTGCGGTAGATGTGCTGGTA
GTGGACTCCGTTGCTGCTCTTACTCCAAAAGCTGAAATCGAAGGCGAGATGGGTGACAGCCACATGGGCCTCCAGGCGCG
TATGCTTTCTCAGGCAATGCGTAAGCTTACCGGTAACCTTAAGCAGTCTAACTGTATGTGTATTTTCATCAACCAGATCC
GTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTAACGCACTTAAGTTCTACGCTTCTGTCCGT
CTTGATATCCGTCGTACCGGTGCTATCAAAGAAGGTGATGAGGTTGTTGGTAACGAAACCAAGATCAAAGTGGTTAAGAA
CAAGATCGCAGCACCATTTAAAGAAGCTCATACACAAATCATGTATGGTCAGGGCTTTAACCGCGAAGGTGAGCTGATTG
ACCTTGGTGTTAAGCACAAGCTGGTAGAAAAAGCAGGTGCCTGGTACAGCTACAAAGGCGATAAGATTGGTCAGGGCAAA
GCTAACGCATGTAAATTTATGCGTGAGAACCCTGAAGCTGCAACTGAGATCGACACTAAGCTACGTGAGCTTTTGCTGAC
GCCTGCTGCGATTGAAGAAGATGATGCAGTGCCAGAAATGCCGGCGGATGCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

92.401

90.137

0.833
  recA Vibrio cholerae O1 biovar El Tor strain E7946

92.401

90.137

0.833
  recA Pseudomonas stutzeri DSM 10701

73.121

94.795

0.693
  recA Acinetobacter baumannii D1279779

72.174

94.521

0.682
  recA Acinetobacter baylyi ADP1

73.716

90.685

0.668
  recA Glaesserella parasuis strain SC1401

69.412

93.151

0.647
  recA Ralstonia pseudosolanacearum GMI1000

71.746

86.301

0.619
  recA Neisseria gonorrhoeae MS11

68.098

89.315

0.608
  recA Neisseria gonorrhoeae MS11

68.098

89.315

0.608
  recA Neisseria gonorrhoeae strain FA1090

68.098

89.315

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.144

87.397

0.578
  recA Helicobacter pylori strain NCTC11637

60.641

93.973

0.57
  recA Helicobacter pylori 26695

60.35

93.973

0.567
  recA Streptococcus pneumoniae TIGR4

62.236

90.685

0.564
  recA Streptococcus pneumoniae Rx1

62.236

90.685

0.564
  recA Streptococcus pneumoniae D39

62.236

90.685

0.564
  recA Streptococcus pneumoniae R6

62.236

90.685

0.564
  recA Streptococcus mutans UA159

59.195

95.342

0.564
  recA Streptococcus mitis NCTC 12261

61.934

90.685

0.562
  recA Streptococcus mitis SK321

61.934

90.685

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

87.945

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

90.959

0.551
  recA Streptococcus pyogenes NZ131

60.423

90.685

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.994

87.945

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

59.159

91.233

0.54
  recA Lactococcus lactis subsp. cremoris KW2

59.752

88.493

0.529